Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00656 ATGTGCAAAGGTGCAGAACAGATCAGAAAGCACGGAGAAGGAGGTATCTACAAGAGCTTCATTCATCTAGGAGACAACCCTTTGTGTTGCTCAAGGGGAGTGCCAGTTTCTTGTGAGCTTTGCCGCTCATCAGCTTCCTTGTATTGCGAAGCAGACGATGCATATCTATGTGAAAAATGTGACAGATGGGTTCATAGTGCTAACTTCTTAGCCTCGAGACACATCAGATGCTTTCTATGCAGAACATGTCAGAACCTTACTCGACGCTATCTGGTTGGAGTCTCAGCTGATCATTCTTCAAGCCACAATGACTTGGGAACATGA 324 0.4537 MCKGAEQIRKHGEGGIYKSFIHLGDNPLCCSRGVPVSCELCRSSASLYCEADDAYLCEKCDRWVHSANFLASRHIRCFLCRTCQNLTRRYLVGVSADHSSSHNDLGT* 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00656 107 CDD Bbox1_BBX-like 38 79 - -
Pte10g00656 107 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 37 87 - -
Pte10g00656 107 SMART bboxneu5 33 79 IPR000315 GO:0008270
Pte10g00656 107 Pfam B-box zinc finger 37 74 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00656 Pte-Chr10 6548586 6549721 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00656 1 93 C2C2-CO-like Transcription Factor Family AT3G21890 53.684 1.48e-26 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pte10g00656 zf-B_box 1.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00656 - - qsa:O6P43_000600 122.864