Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00652 ATGGAATCTTGGGGTTACCCCTCAGAAGGGGAAGAGCATTTCTTTCCTGAGGAAATAGATTTGCCAATTGATGTTATCCTAAGAAGTACAAAGGCCTTATTTGAATGGGGTGACACGGACATCTGCAACTCCGAAAGAGATGGAGTTTTGTCACCTGGAGAAGCAGTTGAAAGCTTTGATTTCGTTGAAATGGGATCCCCAGATTATTTCCATAGTTATTTTCAGAATAATCAATGTCTAGAGGCATCAAGCTGTGAGGTTGATTGTGATTTTAGTAAGCTATGGGAAACTGCCGGTGACAATATAATAAGCTGCAACTCGTCTGCTGGGCAAGAAGAATCTCCAATAAAACATTCAATTTCCTTCATGAATTCTGAAAGCCCTGATTCATCATTAATTGATTTGAAGGTTGATATTTTGGATGATTTTACAGATGTCCAGTATAGCAAACTTGCAGAAGAGGGATTAAATGTATCTTTGTCATGCCAAACTACACTAGGAAAGAAAGACCGACCCGCAATGGTGTGCTATCAAGCATCCATTTGCCAAGTTTATGGTTGTAACATCGACCTTAGTTCCTTAAAGGATTACCATAAAAGGCACAAGGTCTGTGATGTTCATTCAAAGGCTGCTAAAGTTGTTGTCAATGGCTCCGAACAGAGGTTCTGTCAACAGTGCAGCAGGTTTCATCGGCTGGATGAATTTGATGATAGTAAGCGAAGTTGTCGCAGACGCCTTGCAGGGCATAATGAGCGTAGAAGAAAGTCTGAATTTGACAATTTATCTGGAAGATCGCGTAAATTGATTCCTTTATATCATGGTTCCAAATATCCTGGATTTGGACTCCTGAGGAAATCCCAGGGTGCTTTCGGCAACATCTTTCAGGGTGGCTTCTTTTATCCTGGAAAACATGAACAACTTAATCAGAGTGAAGGATACAAGAAGCTAGTGAAGGAGTCAATGTACAGACCCGAGAAATTTGATAGATCCTTCCTCAATGGCAATGGTAAAAGACTCTCGTCTAAAATAGATTCATCTGGTACCGAGAATTGTAATCCTTATGGATCATCATCAGCCATTCAGGGAAACTCCAGCTGTGCTCTCTCTTTTCTGTCACATCAGTCACAGGCACTGTCAAACCACACAGCAGGAGATTCCATGGCTAGCACTCGAACATTTCAAGGCATCTCTGCCTACATCAATCATTCCCAAAACTCTCATACACCTTTCAGAGTAAGCATGAAGGAAGATTACGTGATCACTGATTCTTATTTTCATGGGTTGAACTCTACAAAAGTTGATCAGATTGGAACAATGATTCTCTCTGATGTTGATCACGCTGTTGACCTTGAAGGGAGCAGAAATGATTTTCACCAGTCTAATTCATCTAATGCAAATATTTCCGCAGTAAATGGATGCACTGTCAATCTTCTCCAACTGTCATCAAATCTTCATAGAGTGGAACAACAAAGACAATTTGTACTAGGAAATCAAGGAACGAGGACTTTTGTTGCTTCCCCACCATTTAACTGGACTCCAATCCAATAA 1548 0.4063 MESWGYPSEGEEHFFPEEIDLPIDVILRSTKALFEWGDTDICNSERDGVLSPGEAVESFDFVEMGSPDYFHSYFQNNQCLEASSCEVDCDFSKLWETAGDNIISCNSSAGQEESPIKHSISFMNSESPDSSLIDLKVDILDDFTDVQYSKLAEEGLNVSLSCQTTLGKKDRPAMVCYQASICQVYGCNIDLSSLKDYHKRHKVCDVHSKAAKVVVNGSEQRFCQQCSRFHRLDEFDDSKRSCRRRLAGHNERRRKSEFDNLSGRSRKLIPLYHGSKYPGFGLLRKSQGAFGNIFQGGFFYPGKHEQLNQSEGYKKLVKESMYRPEKFDRSFLNGNGKRLSSKIDSSGTENCNPYGSSSAIQGNSSCALSFLSHQSQALSNHTAGDSMASTRTFQGISAYINHSQNSHTPFRVSMKEDYVITDSYFHGLNSTKVDQIGTMILSDVDHAVDLEGSRNDFHQSNSSNANISAVNGCTVNLLQLSSNLHRVEQQRQFVLGNQGTRTFVASPPFNWTPIQ* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00652 515 FunFam Squamosa promoter-binding-like protein 14 174 243 - -
Pte10g00652 515 ProSiteProfiles Zinc finger SBP-type profile. 179 256 IPR004333 GO:0003677
Pte10g00652 515 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 164 386 IPR044817 GO:0003677
Pte10g00652 515 Pfam SBP domain 182 255 IPR004333 GO:0003677
Pte10g00652 515 Gene3D - 178 243 IPR036893 GO:0003677|GO:0005634
Pte10g00652 515 SUPERFAMILY SBT domain 181 260 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00652 Pte-Chr10 6423033 6426658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00652 168 494 SBP-box Gene Family AT1G69170 36.443 8.55e-45 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pte10g00652 SBP 7.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00652 - - qsu:112029430 369.392