Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00649 ATGGGAAGGGGTAGGGTTCAGCTCAAGAGGATTGAGAACAAGATCAATAGGCAGGTAACTTTCTCCAAAAGGAGAGCTGGGTTGGTTAAGAAAGCTCATGAGATCTCTGTGCTATGTGATGCTGAGGTTGCGTTGATTGTCTTCTCTCACAAAGGAAAGCTTTTTGAATACGCTACTGATTCTTGGTGGGTGCTTTCTTCTTCTAGTACCTCTTCATATCTTCTATTCTCATAA 234 0.4231 MGRGRVQLKRIENKINRQVTFSKRRAGLVKKAHEISVLCDAEVALIVFSHKGKLFEYATDSWWVLSSSSTSSYLLFS* 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00649 77 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte10g00649 77 SUPERFAMILY SRF-like 2 63 IPR036879 GO:0003677|GO:0046983
Pte10g00649 77 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte10g00649 77 FunFam MADS-box transcription factor MADS-MC 13 73 - -
Pte10g00649 77 Gene3D - 13 75 IPR036879 GO:0003677|GO:0046983
Pte10g00649 77 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 61 - -
Pte10g00649 77 CDD MADS_MEF2_like 2 61 IPR033896 GO:0000977|GO:0045944
Pte10g00649 77 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte10g00649 77 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte10g00649 77 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte10g00649 77 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte10g00649 77 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00649 Pte-Chr10 6357765 6357998 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00649 1 61 MADS-box Gene Family AT1G26310 86.885 1.32e-32 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pte10g00649 SRF-TF 1.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00649 K09264 - gmx:100810129 120.553