Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00579 ATGGAATACAATATTCACTTCGACTTTACTATATATATTCCGCACTCAAACACCAATATCTATTCCAAACTTGCTCTCATTTCTTGTACCTTAGTCAAAACTCAAAGCTCCCTTCCAATAACAACATCTTTGCTATCATCTCACCTCTTTCTTCTTCTTCTTCTTTCCACATACGCCATACTCTCTATTTGCAAAATGGATGGAGGTATCAGCACAGATGAAAGCGCCACAGTAAGTACTGATTCCATTTCCATGTCCATTACTCCGGTGACTACTTTGTCTCCTTTTCCGGCAGCTAAGAAGTCACCAGAGAGTCCGACTTGCCGTGTGGGCAGCGGTGCGAGCACTATCGTGGACCCGGAGAGCGGTGTTGAAGCTGAGTCAAGGAAGCTTCCTTCTTCGAAATACAAAGGAGTAGTGCCTCAACCTAACGGTCGGTGGGGGGCTCAGATTTATGAGAAGCACCAACGTGTTTGGTTGGGAACTTTCAATGAAGAAGACGAAGCAGCCAAGGCATATGACATAGCAGCTCAAAGGTTTCGTGGCAAAGATGCTGTTACAAACTTCAAACAATTGGCAGCCGACAGTGGAAACGACGACATTGAAATTGCTTTCTTGGATAGGCATTCGAAAGCTGAGATTGTCGACATGCTGAGAAAACATACATACATTGATGAGCTTGAACAAAGCAAGAGAAACTTAGACTTGTTTGGCGGTGGACATGGTGATTATGGAAAGCAACTGCTCATGAACAATGAAGGGAAGCTCGGTGCAGATGGTTACCTATTCGGGTCGGCAGATCGGTTCAACTCCAAAGCGCGTGAGCAATTGTTCGAGAAGACAGTAACACCAAGTGACGTTGGGAAGCTGAATAGGCTTGTGATACCTAAGCAACATGCAGAGAAATACTTTCCATTGCCAGGTGGAAGCTCTAGCATGAAAGGTGTGCTTTTGAATTTTGAGGATGTTGGGGGAAAAGTATGGAGATTTAGATACTCTTACTGGAATAGCAGTCAAAGCTATGTCCTTACAAAAGGTTGGAGCAGGTTCGTGAAGGAGAAGAGCCTCAAAGCCGGTGACACTGTGAACTTTCAGAGGTCGATCGGACCTGAAAAGCAATTGTACATTGACTGGAAAGTGAGGGGTACTGCTGATGATCATGATCAGTCCAATGGTGCTGAGGCTGGAGTTGGTTTGTTGAACCCAGTTGGACAAGTTCAGATGTTAAGACTATTTGGGGTCAACATTGATTTGAAAGCACATGAAGGAGGAGGAGGAGGAGCTGTCACTGCAAGTGGGCTTGTGGATGCCATTGGAGGATGTAATATAAGGAAGAGGGAATTAGAGATGGAGCTTTTAACATTAGACTACTGTAGTAAGAAGGCAAGGATCATTGGAGCTTTGTAA 1407 0.4456 MEYNIHFDFTIYIPHSNTNIYSKLALISCTLVKTQSSLPITTSLLSSHLFLLLLLSTYAILSICKMDGGISTDESATVSTDSISMSITPVTTLSPFPAAKKSPESPTCRVGSGASTIVDPESGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAAKAYDIAAQRFRGKDAVTNFKQLAADSGNDDIEIAFLDRHSKAEIVDMLRKHTYIDELEQSKRNLDLFGGGHGDYGKQLLMNNEGKLGADGYLFGSADRFNSKAREQLFEKTVTPSDVGKLNRLVIPKQHAEKYFPLPGGSSSMKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLKAGDTVNFQRSIGPEKQLYIDWKVRGTADDHDQSNGAEAGVGLLNPVGQVQMLRLFGVNIDLKAHEGGGGGAVTASGLVDAIGGCNIRKRELEMELLTLDYCSKKARIIGAL* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00579 468 CDD B3_DNA 277 372 IPR003340 GO:0003677
Pte10g00579 468 Pfam B3 DNA binding domain 278 375 IPR003340 GO:0003677
Pte10g00579 468 SMART rav1_2 135 196 IPR001471 GO:0003700|GO:0006355
Pte10g00579 468 ProSiteProfiles B3 DNA-binding domain profile. 278 384 IPR003340 GO:0003677
Pte10g00579 468 MobiDBLite consensus disorder prediction 96 116 - -
Pte10g00579 468 SMART B3_2 278 382 IPR003340 GO:0003677
Pte10g00579 468 FunFam AP2 domain-containing protein RAP2.8 134 191 - -
Pte10g00579 468 Gene3D AP2/ERF domain 134 191 IPR036955 GO:0003700|GO:0006355
Pte10g00579 468 Gene3D - 267 393 IPR015300 -
Pte10g00579 468 Pfam AP2 domain 134 182 IPR001471 GO:0003700|GO:0006355
Pte10g00579 468 ProSiteProfiles AP2/ERF domain profile. 135 190 IPR001471 GO:0003700|GO:0006355
Pte10g00579 468 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 130 424 IPR044800 GO:0003700
Pte10g00579 468 SUPERFAMILY DNA-binding domain 134 190 IPR016177 GO:0003677
Pte10g00579 468 SUPERFAMILY DNA-binding pseudobarrel domain 276 367 IPR015300 -
Pte10g00579 468 CDD AP2 134 189 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00579 Pte-Chr10 5283690 5285895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00579 71 467 RAV Transcription Factor Family AT1G13260 57.683 2.29e-139 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Pte10g00579 B3 9.1e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00579 K09287 - qsa:O6P43_032786 494.582