Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00576 ATGCAAAGTGCTCAACCCTACTCTCTGAATAATTTCCCTTCTTGCGAGAGTGCTAATTGTTTACTATCCAATGATGGTGATGAAGATACAATTTCTCTTTCTCTTGGTCTTCCTGGCCAACACAAAAACACCACAATCCCCTCTTCGAAATACCCTACAGCACAAATACTCAATGAGTATCAAAGAAACCCTAGCCTTCTTGATGATCAACAAAATGGTGTCACGGTGGCCCTTCATATTGGCCTTCCAACTAGCTGTAGTACACCAACAACTCCTGATGGCAAGCCTAATCAGTTCTCTGCTAGCACTCCCATTGAAGGCCAGTACTGGATCCCTTCTCCTGCACAAATCCTTGTTGGTCCAACTCAGTTTTCTTGTACAGTTTGCAGCAAAACATTCAACCGTTTCAACAACATGCTGATGCATATGTGGGGACATGGGTCACAGTATAGGAAAGGTCCGGAATCTTTGAGAGGGACAAAGCCAGCATCGTCCGTGATGAGGCTGCCATGTTATTGTTGTGCTGAGGGGTGCAAGAATAACATAGATCATCCAAGGTCGAGGCCTCTCAAGGATTTCAGAACACTGCAGACTCACTACAAAAGAAAGCATGGAGCAAAGCCATTTGGTTGCAGAAAATGTGGTAAGCCATTTGCAGTAAGAGGGGATTGGAGAACTCACGAGAAAAATTGTGGGAAGCTCTGGTTTTGTATCTGTGGTTCTGACTTTAAACACAAGAGGTCTCTTAAAGATCATGTACGTGCATTTGGGGATGGCCATGCTCCACATACCGTAGAAATGTGTGACCAAGTTGAAGAAGGAGAAGAAGAGGATGAGGATGAAGATGAAGAGGATGACTATAATGAAGTAGCTCTAGTTTATGGAAATCGATCTGGTCATAGGTCTGCTTATTTTTAA 918 0.4357 MQSAQPYSLNNFPSCESANCLLSNDGDEDTISLSLGLPGQHKNTTIPSSKYPTAQILNEYQRNPSLLDDQQNGVTVALHIGLPTSCSTPTTPDGKPNQFSASTPIEGQYWIPSPAQILVGPTQFSCTVCSKTFNRFNNMLMHMWGHGSQYRKGPESLRGTKPASSVMRLPCYCCAEGCKNNIDHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVEMCDQVEEGEEEDEDEDEEDDYNEVALVYGNRSGHRSAYF* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00576 305 FunFam Zinc finger protein WIP2 178 260 - -
Pte10g00576 305 PANTHER ZINC FINGER PROTEIN WIP2 50 283 IPR043584 GO:0003700|GO:0010468
Pte10g00576 305 ProSitePatterns Zinc finger C2H2 type domain signature. 126 146 IPR013087 -
Pte10g00576 305 Gene3D Classic Zinc Finger 165 256 - -
Pte10g00576 305 SUPERFAMILY beta-beta-alpha zinc fingers 194 229 IPR036236 -
Pte10g00576 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 124 151 IPR013087 -
Pte10g00576 305 SUPERFAMILY beta-beta-alpha zinc fingers 117 146 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00576 Pte-Chr10 5253072 5254263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00576 19 265 C2H2 Transcription Factor Family AT1G13290 72.289 5.23e-122 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte10g00576 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00576 - - qsa:O6P43_025679 433.721