Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00556 ATGAAGATTTTCGTCAAAACTCTGAAGGGTTCTCACTTCGAAATCGAAGTCGACTCTCAGCACACGGTTTCTGAAGTGAAGAAAAATATTGAAACTGTTCAAGGTGCTGATGTCTATCCTGCTTCCCAGCAGATGCTCATCCACCAAGGGAAGGTTCTTAAAGACAACACAACATTGGAGGAAAATAAAGTGGCTGAAAATACTTTTGTGGTGGTTATGTTAACTAAGAATAAGAGTGCAACAGGTGAAGCTTCAACTGCATCCTCAACGAAGGCTCCTCAGACAAGTTCGACTCCTAAGCCGACCTCAGTTTCAACAGTTCCTCAAACGGCTCCAACCACTGAAACCCAGACTACATCTGGAACTAGTAATGTACCTGCTCCTGCTCCTGCTCCTGCTCCTACTCCTACTCCTGCTCCAGCTGCCACTGCTGGGACAACTGATGTTTATGGGCAGGCAGCATCTAATCTGGTTTCAGGGACCAACCTAGAGGAAACAATCCAGCAGATTCTTGATATGGGTGGAGGTAGTTGGGACAGGGATACTGTTGTTCGTGCGCTTCGTGCTGCATTTAACAACCCAGAGAGAGCTGTTGACTATCTTTATTCAGGGATTCCTGAGCAAGCAGAAATGCCACCTCTTGCTCGGCCACCTCCTAGTACACAAGCTGCCAGCCCTGGTGCTCAGTCTCCGCCGTCTGCACAACCGGCACCTCCTTCTAGTGGACCCAATGCAAATCCTTTAGACCTCTTTCCCCAGGGACTCCCAAATGCGGGCTCTGGTGGTGGTTCAGGTGCCAGTGCTGGCACCCTTGATTTTCTGCGCAACAGTCAGCAGTTCCAATCCTTACGAGCTATGGTTCAGGCTAATCCACAAATATTGCAGCCTATGCTCCAGGAGCTGGGTAAACAAAATCCTCACCTCATGAGACTGATTCGAGATCATCAGGCTGACTTCCTTCGCCTTATTAATGAACCAATGGAAGGTGGAGAGGGGAATATACTAGGACAACTTGCTGCAACAATGCCCCAGGCAGTAACTGTCACCCCTGAGGAGCGTGAAGCTATAGAACGTCTTGAGGCAATGGGGTTTGATCGAGCTATTGTATTGGAGGTCTTCTTTGCCTGTAACAAGAACGAGGAGCTGGCGGCTAACTATCTTCTAGACCACATGCATGAATTCGATGATTAA 1191 0.4836 MKIFVKTLKGSHFEIEVDSQHTVSEVKKNIETVQGADVYPASQQMLIHQGKVLKDNTTLEENKVAENTFVVVMLTKNKSATGEASTASSTKAPQTSSTPKPTSVSTVPQTAPTTETQTTSGTSNVPAPAPAPAPTPTPAPAATAGTTDVYGQAASNLVSGTNLEETIQQILDMGGGSWDRDTVVRALRAAFNNPERAVDYLYSGIPEQAEMPPLARPPPSTQAASPGAQSPPSAQPAPPSSGPNANPLDLFPQGLPNAGSGGGSGASAGTLDFLRNSQQFQSLRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPMEGGEGNILGQLAATMPQAVTVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFDD* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00556 396 MobiDBLite consensus disorder prediction 79 126 - -
Pte10g00556 396 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 161 204 IPR015940 -
Pte10g00556 396 NCBIfam UV excision repair protein Rad23 1 395 IPR004806 GO:0006289
Pte10g00556 396 SMART uba_6 163 203 IPR015940 -
Pte10g00556 396 SMART uba_6 352 389 IPR015940 -
Pte10g00556 396 Gene3D - 262 327 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pte10g00556 396 MobiDBLite consensus disorder prediction 79 145 - -
Pte10g00556 396 Gene3D - 156 206 - -
Pte10g00556 396 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 349 390 IPR015940 -
Pte10g00556 396 MobiDBLite consensus disorder prediction 209 270 - -
Pte10g00556 396 Pfam UBA/TS-N domain 163 201 IPR015940 -
Pte10g00556 396 Pfam UBA/TS-N domain 352 387 IPR015940 -
Pte10g00556 396 Pfam XPC-binding domain 271 326 IPR015360 GO:0003684|GO:0006289|GO:0043161
Pte10g00556 396 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Pte10g00556 396 CDD Ubl_Rad23 1 74 - -
Pte10g00556 396 PRINTS DNA repair protein Rad23 signature 363 377 IPR004806 GO:0006289
Pte10g00556 396 PRINTS DNA repair protein Rad23 signature 346 362 IPR004806 GO:0006289
Pte10g00556 396 PRINTS DNA repair protein Rad23 signature 297 319 IPR004806 GO:0006289
Pte10g00556 396 PRINTS DNA repair protein Rad23 signature 378 393 IPR004806 GO:0006289
Pte10g00556 396 FunFam UV excision repair protein RAD23 homolog 343 391 - -
Pte10g00556 396 Gene3D - 344 391 - -
Pte10g00556 396 SUPERFAMILY UBA-like 159 212 IPR009060 GO:0005515
Pte10g00556 396 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 385 - -
Pte10g00556 396 FunFam UV excision repair protein RAD23 homolog 156 206 - -
Pte10g00556 396 SUPERFAMILY UBA-like 332 394 IPR009060 GO:0005515
Pte10g00556 396 SMART CBM 269 312 IPR006636 -
Pte10g00556 396 CDD UBA1_Rad23_plant 157 206 - -
Pte10g00556 396 CDD UBA2_RAD23_plant 348 390 - -
Pte10g00556 396 Gene3D - 1 80 - -
Pte10g00556 396 SUPERFAMILY XPC-binding domain 268 333 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pte10g00556 396 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Pte10g00556 396 SMART ubq_7 1 75 IPR000626 GO:0005515
Pte10g00556 396 MobiDBLite consensus disorder prediction 231 245 - -
Pte10g00556 396 FunFam UV excision repair protein RAD23 1 80 - -
Pte10g00556 396 SUPERFAMILY Ubiquitin-like 1 91 IPR029071 -
Pte10g00556 396 FunFam UV excision repair protein RAD23 B 261 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00556 Pte-Chr10 5010810 5016947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00556 1 73 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 41.892 4.08e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00556 K10839 - qsa:O6P43_032759 511.916