Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00552 ATGCCAGAGCCTCGGAAGCAATCGGAAGATGTCTTTGTACTCTGCAAGGAGACCAAGCAGAGATCTTGTTTTGACTTTTCCAAAGTGAGGAAACTTCGTGTCATCTGTACCGACCCGGATGCTACAGATGACTCATCCAGCGAAGATGAAGGGCATGTAACTGTCCCTAAGAGATTGAAGCGCCGTATTGTAAGTGTAATCAATTTCCCTGCTCAACCAAATGGTTATGAGATTGAGAGCTCTTGTCAGGACACCAACAGCGGCCAAAACCCAAAGAGGAAGAGGGTTTTAGCTAAAACCTCTGCAACTGCCAAAGGTCCGAAGAGATTCAAGGGTGTTCGACAAAGGAAATGGGGTAAATGGGCTGCTGAGATTCGTCACCCTTTTGAAGGTCGTAGAATTTGGTTGGGTACTTTTAATACTCCTGAAGAGGCCTCCAAGGCATATGAGGCAAAGAAAAAGGAATTTGAATTACGTGGTCATGAATATGGGAAGAGGAAGGTTGTCGCTTCTGCTCCTACCTCTGTTACACCGGCTGCTTCTGATAAGACCAACAACAACGTCTGCTCTTCTGCCCTGATGTCTCAGGACGACAAGGCTACTAGGTCTACTACCTCCCAGGACTCTGAAAGTGCATTCTCGCACACGTCACCTGCATCTGTTTTAGATTTGGAAACTTCAGCATCTAATCTTGTTTCGGATGACGCCAATGTCAATCAAGAGGTTGTCGACACTCATGATCTGGCTGTTGGCTTTGCTCAGCTTCCAATCCCTGACTTCAGTTTTATTCAGGAACCAGTGTCTAATATTCCACCTGTATCGACAGTGTTCTTCGACATTGGTGATGACTGGGATATGTTTTCCATGGACGATTTGGCTAATGATTGTGATGCTTATGACTTTCTGAAGGGGATTGAATTTGATGGTCTTGAAAACAACGAGCCAAGGGAACTTCCTGATTACGATTTCGACGATATTGTTGCTGATGATTGTATTGGCTGGGCTGATGAACCACTCAATATTCCATGCTCTTAA 1035 0.4512 MPEPRKQSEDVFVLCKETKQRSCFDFSKVRKLRVICTDPDATDDSSSEDEGHVTVPKRLKRRIVSVINFPAQPNGYEIESSCQDTNSGQNPKRKRVLAKTSATAKGPKRFKGVRQRKWGKWAAEIRHPFEGRRIWLGTFNTPEEASKAYEAKKKEFELRGHEYGKRKVVASAPTSVTPAASDKTNNNVCSSALMSQDDKATRSTTSQDSESAFSHTSPASVLDLETSASNLVSDDANVNQEVVDTHDLAVGFAQLPIPDFSFIQEPVSNIPPVSTVFFDIGDDWDMFSMDDLANDCDAYDFLKGIEFDGLENNEPRELPDYDFDDIVADDCIGWADEPLNIPCS* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00552 344 Gene3D AP2/ERF domain 108 163 IPR036955 GO:0003700|GO:0006355
Pte10g00552 344 Pfam AP2 domain 109 156 IPR001471 GO:0003700|GO:0006355
Pte10g00552 344 ProSiteProfiles AP2/ERF domain profile. 109 173 IPR001471 GO:0003700|GO:0006355
Pte10g00552 344 CDD AP2 108 160 IPR001471 GO:0003700|GO:0006355
Pte10g00552 344 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 30 237 - -
Pte10g00552 344 SMART rav1_2 109 175 IPR001471 GO:0003700|GO:0006355
Pte10g00552 344 SUPERFAMILY DNA-binding domain 109 155 IPR016177 GO:0003677
Pte10g00552 344 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700|GO:0006355
Pte10g00552 344 PRINTS Ethylene responsive element binding protein signature 132 148 IPR001471 GO:0003700|GO:0006355
Pte10g00552 344 MobiDBLite consensus disorder prediction 79 96 - -
Pte10g00552 344 MobiDBLite consensus disorder prediction 194 218 - -
Pte10g00552 344 MobiDBLite consensus disorder prediction 79 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00552 Pte-Chr10 4961920 4965267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00552 29 343 AP2-EREBP Transcription Factor Family AT1G68550 36.420 3.74e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte10g00552 AP2 2.6e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00552 - - qsa:O6P43_032756 265.388