Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00547 ATGATTTCGAGCAAGAAAGTAGCTAACGCCGTTGGTGGCAAAACTGCTAGAGCTTGTGATAGTTGTATCACAAAAAGGGCACGTTGGTACTGCGCCGCTGATGATGCTTTTCTTTGTCAGGTTTGTGATTCTTCAGTCCACTCAGCTAATCCGTTAGCTCGCAGACATGAAAGGGTCCGCTTGAAGACAGGTTCCTTTAAGCCTTCTGATCATGGAGGCCGCAGTGCGGGACAGCTTAAAAATTCAGCACCATCTTGGCATCGAGGTTTTACAAGAAAAGCTCGAACTCCAAGACACGGGAGGTACTCAACAAACCATCAAACATCAAAGTCCGAAGAAGATGAGGAAGAACTAGCTGCAAGGAGTTCCAATCCATTTTACCTAGTTCCGGAAGTTATTTCAGATGAGAATTTATCCCATGAGGAAAATGAGGAGCAGCTCCTTTATAGAGTTCCTATCTTTGATCCTTTTATGTCGAAGCTGTGCACTCATCAATCATCTGCTAATTCAGCTGAAGATGCCATAGCTGGAACTAGTGCTAACAATGAAGAAGTGGGAAATAAAGGTACTAAGGGAAGTGAAAGTAAAGCGTCATTAGTCAAGGAAGCAAATGGCTTGGATGATAACTTGCATATGTTTATCCCTTCTGATATTGAACTTGCAGAATTTGCAGCTGACGTTGAGAGTTTGCTAGGTAGGGGACTAGAAGATGAGTGTATTGGCATGGAGGAGTTGGGACTTGTTGATACTAAGGAAGAGAACTCAAGGGAGTGTTCGGTGGGTAGTGCTAAAGTGAAGGTTGAAGACGAAGTAGCTAATGATGGAACAGGCACGGCTGTTGAAGTTGAGGCGGATCAAATGGACATGGCAAGAGAATCATTTGAATTCAACTTTGATTATGATTCACTTGCAACATGTGAAGAAGAAGAAGAAAAGGCTCATCTTCCAATAACCTCCAGTTTTCAAAATGGTGGGGAAGGTGAAGGGCATGATGTGAAGAAGAAGATACTGCTGAATTTGAATTATGAGGCGGTTATTACAGCTTGGGCAACAAGTCAAAGGTCATCGCCATGGACAAATGGGGATAGGCCAAACATAGACCTCAATGAATGCTGGCCTCACTGCATGGGCACCTGTGGAATTGAGGTTCATCTTCCTTATGTTGACTTCGGTGGGCTAGGGTGTCAGCCTGCAATGTTGGACGGAGGGAGAGAAGCCAGGGTATCAAGGTACAGAGAAAAACGAAGAACAAGATTGTTTTCCAAGAAAATAAGGTACGAGGTTAGAAAATTGAATGCAGAGAAGAGACCCCGGATGAAAGGGAGATTCGTCAAGAGGGCTTCCTTTACAGGATCTGGTTTTCCTTTGCTCAACAAATAG 1380 0.4391 MISSKKVANAVGGKTARACDSCITKRARWYCAADDAFLCQVCDSSVHSANPLARRHERVRLKTGSFKPSDHGGRSAGQLKNSAPSWHRGFTRKARTPRHGRYSTNHQTSKSEEDEEELAARSSNPFYLVPEVISDENLSHEENEEQLLYRVPIFDPFMSKLCTHQSSANSAEDAIAGTSANNEEVGNKGTKGSESKASLVKEANGLDDNLHMFIPSDIELAEFAADVESLLGRGLEDECIGMEELGLVDTKEENSRECSVGSAKVKVEDEVANDGTGTAVEVEADQMDMARESFEFNFDYDSLATCEEEEEKAHLPITSSFQNGGEGEGHDVKKKILLNLNYEAVITAWATSQRSSPWTNGDRPNIDLNECWPHCMGTCGIEVHLPYVDFGGLGCQPAMLDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFTGSGFPLLNK* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00547 459 MobiDBLite consensus disorder prediction 177 194 - -
Pte10g00547 459 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 9 447 - -
Pte10g00547 459 MobiDBLite consensus disorder prediction 105 120 - -
Pte10g00547 459 Pfam CCT motif 404 446 IPR010402 GO:0005515
Pte10g00547 459 ProSiteProfiles CCT domain profile. 404 446 IPR010402 GO:0005515
Pte10g00547 459 SMART bboxneu5 14 61 IPR000315 GO:0008270
Pte10g00547 459 MobiDBLite consensus disorder prediction 177 196 - -
Pte10g00547 459 CDD Bbox1_BBX-like 18 61 - -
Pte10g00547 459 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Pte10g00547 459 Pfam B-box zinc finger 16 59 IPR000315 GO:0008270
Pte10g00547 459 MobiDBLite consensus disorder prediction 64 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00547 Pte-Chr10 4902275 4904249 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00547 5 446 C2C2-CO-like Transcription Factor Family AT1G25440 42.920 1.04e-100 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pte10g00547 zf-B_box 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00547 - - qsu:112018537 555.058