Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00546 ATGAGATCCAGCTGCAATGGCTGTCGTATACTTCGAAAAGGTTGCGGTGAAAACTGCACCATCAGACCCTGCCTCGAGTGGATCAAAGTCGCTGATGCCCAATCCAATGCCACGCTCTTCCTTGCCAAGTTCTATGGCCGTGCTGGCTTACTCAACCTCATCAATGCTGGCCCCCCAGATAAGCGCCCTGCTATATTCAAGTCCTTGTTATACGAGGCATGTGGTAGGATTGTGAATCCTGTATATGGGTCTTTGGGGTTGCTATGGTGTGGGAATTGGGCACAATGCCAAGCAGCTGTGAATGCAGTGCTCGACGGAACAGAGCTCACAGGATCGGCGAAATTTACAGAACATCAGAAGCAGAAGCAGCTAGCTTCACAAACAAACCTAAACCCTTCTCTTGGCGCCTCCGACATTCGCCACGTGTTCAAGGAAGACAAAATGGAGCCAGTTGGTGTCACTGGTGATGCTGGTGTCCACACAGCCAAAGGTAAAACCCGGTTCAAGAGAGCTGCGACGGGCGAGTCAAAGCTCATCAAACCAATAGCTAAATTCGGGTCAATTGCTGTTAGTTCAACCGGTTCGAAAGTGAATGCACCGGCTTGGCTTTTTGAACCGGTTCGTAGTGGTCTTACTGTGGATGAGAGTATCCAGATGGGCAGGAAGGTTAATAAGGATGGTTCTGAGGGTGAGAGTGTATTCTCTGTTGAAACCGTGGAGGGTTGTTTGATGAACCGGGAACATTCAAACTGGGCGATGAACGACATTCATGATCCGAGTCAATTGAACCTGGATTTAACTCTTGGTTAA 810 0.4901 MRSSCNGCRILRKGCGENCTIRPCLEWIKVADAQSNATLFLAKFYGRAGLLNLINAGPPDKRPAIFKSLLYEACGRIVNPVYGSLGLLWCGNWAQCQAAVNAVLDGTELTGSAKFTEHQKQKQLASQTNLNPSLGASDIRHVFKEDKMEPVGVTGDAGVHTAKGKTRFKRAATGESKLIKPIAKFGSIAVSSTGSKVNAPAWLFEPVRSGLTVDESIQMGRKVNKDGSEGESVFSVETVEGCLMNREHSNWAMNDIHDPSQLNLDLTLG* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00546 269 Pfam Lateral organ boundaries (LOB) domain 4 101 IPR004883 -
Pte10g00546 269 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Pte10g00546 269 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 4 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00546 Pte-Chr10 4898528 4899468 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00546 1 175 AS2 family AT1G68510 56.831 1.99e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pte10g00546 LOB 4.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00546 - - pop:7483954 234.572