Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00541 ATGCCAGAAGGGAACCCCTTAGACCTCAACAACTTTCCAGATGAATACAGTAGAGATGTCAGCAAACACGTCTTCGAGGAAGGTTCTTCGTCACGAGATGGTTACAGGAAAAAGAAAAGCGGCGTCAAGGATGAAAAAGATGACTGCGGGAAGGTCTATGAGTGTAGATTTTGTTCCCTTAAGTTCTGCAAATCTCAAGCACTTGGGGGACACATGAATCGTCACAGACAAGAGAGGGAGACAGAGACACTGAACCGTGCTCGTCAGCTGGTGTTTGGAAACGATAACCTAGCCGCCCCAGGGGCCCCTCACCTAGGATGGTGTCAACCAATTGGATCAGAAAGCTATCATTCAACAGGAGCAGGCGGTATGGGAGACCCAACGTTGCCGCTAAGATGCTCAAGGTATTACGCAGGTGGTTCTTCATCATCACTGATACCACAGCCACCGCTATACTCGTCACCTTCTCGACCTGCTATGTCTTTCGCATCCCAGTACCCTTCGGCAGTGCATCCAATGAACGATTATTATGTTGGTCATGTTCTTAGTGGTGGAAGCCAACAGTACAACCCCCACCACCATCTCCACCACCCTAACTTAAACTATGATCGTCACTCCAATTACACCTGTATTGGTGCACCGGTAGCGCAAGGGTTTAATGGCCGGTTTCCAGATATGACAGTGTTAGCTGGAATAGGAGGAGGAAGCAGCAATGGAGGTAGTAGCGGTAGAGACGGGTCACTGCACAGTTCTGATCAGGAAGGGCTAAATTGGGGAAGGAGCAGCTATACTGGAGCACATCAGCATTTGGATACCACGACGGTGATCAATAGATTTCATCAAGATGGTTTCTAA 855 0.4865 MPEGNPLDLNNFPDEYSRDVSKHVFEEGSSSRDGYRKKKSGVKDEKDDCGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNRARQLVFGNDNLAAPGAPHLGWCQPIGSESYHSTGAGGMGDPTLPLRCSRYYAGGSSSSLIPQPPLYSSPSRPAMSFASQYPSAVHPMNDYYVGHVLSGGSQQYNPHHHLHHPNLNYDRHSNYTCIGAPVAQGFNGRFPDMTVLAGIGGGSSNGGSSGRDGSLHSSDQEGLNWGRSSYTGAHQHLDTTTVINRFHQDGF* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00541 284 MobiDBLite consensus disorder prediction 234 260 - -
Pte10g00541 284 Gene3D Classic Zinc Finger 28 98 - -
Pte10g00541 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 80 IPR013087 -
Pte10g00541 284 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Pte10g00541 284 PANTHER ZINC FINGER PROTEIN JAGGED 28 239 IPR045320 GO:0003700
Pte10g00541 284 MobiDBLite consensus disorder prediction 20 46 - -
Pte10g00541 284 SUPERFAMILY beta-beta-alpha zinc fingers 51 81 IPR036236 -
Pte10g00541 284 FunFam Zinc finger protein STAMENLESS 1 26 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00541 Pte-Chr10 4824380 4826623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00541 3 158 C2H2 Transcription Factor Family AT1G13400 49.689 6.81e-29 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00541 - - qsu:111996161 320.857