Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00536 ATGAAGCTCAATGAGAGACTCTTTGCTCTTAGAGCAGTGGTCCCCAACGTCAGCAAGATGGACAAGGCTTCCATAATTAAGGATACCATTGACTACATCCAAGAGTTGCACGAACAAGAAATAAGGATTCAAACTGAGATAATGGAGCTTGAATCTGGGAAATTGAAGAAAAACCATAGCTATGAGGTTGACCAAGAACTTCCTGCTTTACTCAATACCAAGAAGAAGAAAAAAAAGACTGAGCAATTCTATGATTCTGGGTGCTCTAGAAGCTCACCCCTTGAAGCCTTTGACCCTTGGATTCTGGGATTTCTGCAGTATTACAGAAGCCATAGTCAGCGTTTCTCACTCGTGATTATGGAGTTGGGTTTGGTAGAGCTTGGGTGA 387 0.4238 MKLNERLFALRAVVPNVSKMDKASIIKDTIDYIQELHEQEIRIQTEIMELESGKLKKNHSYEVDQELPALLNTKKKKKKTEQFYDSGCSRSSPLEAFDPWILGFLQYYRSHSQRFSLVIMELGLVELG* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00536 128 Gene3D - 1 63 IPR036638 GO:0046983
Pte10g00536 128 SMART finulus 1 42 IPR011598 GO:0046983
Pte10g00536 128 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 2 50 IPR036638 GO:0046983
Pte10g00536 128 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 36 IPR011598 GO:0046983
Pte10g00536 128 Pfam Helix-loop-helix DNA-binding domain 2 36 IPR011598 GO:0046983
Pte10g00536 128 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00536 Pte-Chr10 4770241 4771313 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00536 2 91 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 50.549 4.03e-19 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte10g00536 HLH 1.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00536 - - zju:107421731 134.806