Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00533 ATGATGAGGCCTGGTGCACCAGAGGATTGTACTAACTTGAAGAACCATGGATGTGCGCCTTTCTTCACTGATAATCTTTCTAATTGTCACCTGCCTAATCTGCCCATCGTTCAGAACCAATATCATCATCCACATCTTACCTCAGAAACTCAGTCCTCAGCATCTATTTACAATGTTTTCGCAGATGATACAAGAGCAAAATTTCTTCCAATATCAGAAACCTTTGACAGTGTTTTTGCTAGAACTGGTTTACCGGATTTGAAAAGCCTAGATAAAAACAAGAGGAAGAGAAGGAGCAGTACTATCTTGGAGAAACCAGCTGAAGTCATCCATGTCCGAGCAAAAAGAGGACAAGCCACTGACAGTCATAGTTTGGCAGAGAGGGTAAGGAGGGAGAAGATAAATGAAAAGCTGAGATGTTTGCAAGGCCTGGTTCCAGGTTGCTACAAGACTATGGGAATGGCTGTAATGTTAGATGTGATAATAGATTATATTCAATCACTCCAGCATCAGATCGAGGTCAGTTTCACTTCTTAA 537 0.4134 MMRPGAPEDCTNLKNHGCAPFFTDNLSNCHLPNLPIVQNQYHHPHLTSETQSSASIYNVFADDTRAKFLPISETFDSVFARTGLPDLKSLDKNKRKRRSSTILEKPAEVIHVRAKRGQATDSHSLAERVRREKINEKLRCLQGLVPGCYKTMGMAVMLDVIIDYIQSLQHQIEVSFTS* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00533 178 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 91 173 IPR024097 GO:0006355
Pte10g00533 178 Gene3D - 112 175 IPR036638 GO:0046983
Pte10g00533 178 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 118 168 IPR011598 GO:0046983
Pte10g00533 178 Pfam Helix-loop-helix DNA-binding domain 122 169 IPR011598 GO:0046983
Pte10g00533 178 SMART finulus 124 174 IPR011598 GO:0046983
Pte10g00533 178 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 116 174 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00533 Pte-Chr10 4754740 4755766 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00533 104 173 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G25330 84.286 2.81e-39 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte10g00533 HLH 8.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00533 - - minc:123213354 149.828