Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00517 ATGAGTCGCCTAGTGAGATTACTACGTGATACTGCCATTAGAACAAGTGGCGGTGGCACTTCGACGACGTCGACAACAACAAACGCTGCAGTGTCAGCACCTCCACCGCAGCCTGTAACGCTAGAATCAGACTTTGTGGTGATTCTAGCTGCTCTTCTCTGTGCTCTTATATGTGTGGTGGGTTTAATTGCTGTGGCACGCTGCGCGTGGCTTCGACGCGGACCTAGGGGTTCATCTCCAACAAGAGCTCTGGCAAACAAAGGCCTTAAGAAGAAGGTGCTTCAGTCTCTTCCAAAATTCACTTACATAAGTAGCAGCAACCACAACGATAACGACAACAGCGGCCAAAACAGCAAGAAGTGGATGGCTACATCAGACTGTGCCATATGCTTAGCTGAGTTCGAAGAGGGAGACGAGATCCGGGTGTTGCCTCAGTGTAGTCATGGTTTCCACTTGGGGTGCATAGATACATGGCTTATGTCACACTCCTCCTGCCCTTCTTGCAGGCAAATTCTCGTGGTAGCCAGGTGTCAGAAGTGTGGCCAGTACCCTGCTGTTGGTAGCAGCAGTGGTGCGAATGGCGGCGGAGGCGGCGGCAGTAGCAGAGACGCAGGAGGAGGGGGAGTGGTGGTGGTCACCGTTGATGACAAAAACGGAGAAGGTGGCAATGCCAGTGGAATTGGCCTAAGGGGTCAGCATCCCCATGATAACGACACTGGTAATAATGTTCATAATAGCGTTTCTAATCACAATGAGAGTGGCAATAATCATACTTACTTGCCTTAG 786 0.5089 MSRLVRLLRDTAIRTSGGGTSTTSTTTNAAVSAPPPQPVTLESDFVVILAALLCALICVVGLIAVARCAWLRRGPRGSSPTRALANKGLKKKVLQSLPKFTYISSSNHNDNDNSGQNSKKWMATSDCAICLAEFEEGDEIRVLPQCSHGFHLGCIDTWLMSHSSCPSCRQILVVARCQKCGQYPAVGSSSGANGGGGGGSSRDAGGGGVVVVTVDDKNGEGGNASGIGLRGQHPHDNDTGNNVHNSVSNHNESGNNHTYLP* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00517 261 CDD RING-H2_EL5-like 126 169 - -
Pte10g00517 261 MobiDBLite consensus disorder prediction 188 261 - -
Pte10g00517 261 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 37 181 - -
Pte10g00517 261 SUPERFAMILY RING/U-box 93 175 - -
Pte10g00517 261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 173 IPR013083 -
Pte10g00517 261 Pfam Ring finger domain 126 169 IPR001841 -
Pte10g00517 261 MobiDBLite consensus disorder prediction 14 34 - -
Pte10g00517 261 MobiDBLite consensus disorder prediction 235 261 - -
Pte10g00517 261 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Pte10g00517 261 MobiDBLite consensus disorder prediction 14 35 - -
Pte10g00517 261 SMART ring_2 127 168 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00517 Pte-Chr10 4643060 4644895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00517 41 180 C3H Transcription Factor Family AT1G20823 62.252 8.74e-58 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00517 - - qsa:O6P43_033499 237.654