Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00472 ATGAGCCAGTCATCGATGTGGACAGGAACACAGCCGCTGTTCACGGCGGCCCAATGGCAGGAGCTTGAACACCAAGCTCACATCTTCAAGTACATCAAGGCTGGTATGCCTGTGCCTCCTGAACTCCTTGCCCCTATTCAAAAGAGTTTTCAATTGATGTCAGCCAAGCTAGTCCACCACCCCACCTTGGGTTACGGGTCCTACTATGGAAAGAAAATTGACCCGGAACCTGGAAGGTGTAGGAGAACAGATGGAAAGAAGTGGCGATGTTCCAAAGAGGCTCACCCTGACTCCAAGTACTGTGAGAGGCATATGAACCGCCGTCGCTACCGTTCAAGAAAGCCTGTGGAATCACAAACATCTTCTCAGACATTGTCGTCGAGCTCACCATCAGACAATGCTGCGGGAAGCAGAAGTGGTTGTGGGAGCTTCCACAGCCTGCCGTTGCACTCAACTGGCAGTGGCGAGACTTTAAGCCTTGGAAACAATATGTCGCAGCTGCAAATGGGACGGGGACCTCTTTCAGACAGTGTAACTAAGAAAGAGTACAGGTCCGAGCAGAAGCTTGATGGAGATAAGCATTTTTCACAGGAGGGCTTACAAAATGCAAGGTTTAGACAAGCTGAGGTGGAGAGCCACATCTTCTTTCAGGATGGCTCGGAGAATGCAAGGCATCACGGTGTGCTCCGTACTTCAGAGAGCACATGGCCTGACATTTCTCAAATTTCCTCCAACTCTTTGGCTGAGTCAAGAAGTGCTTCTTTTATGGCTGGCAATTGCTTCCAACTGCAGACAAACCAAGAAGTCGAGCCCCTGAAAGCTAATACCGCGACATCCAATCAACCTGTCTTCAACATCGAGTTAGGTATGGCCAGGTTTGCTCAGCCTACTCAGGATCTCTTCAGTGAGTGGCATCGGAAAACGGATTTCAGCCGTACAGCTATTGATGACGAACCCCACAAGGATTCTGTCCATAATTCAGATGTCAATGTTAACTGGGGTGGTTCCTTCTTGATGACCACGCAGAAGTGA 1032 0.4952 MSQSSMWTGTQPLFTAAQWQELEHQAHIFKYIKAGMPVPPELLAPIQKSFQLMSAKLVHHPTLGYGSYYGKKIDPEPGRCRRTDGKKWRCSKEAHPDSKYCERHMNRRRYRSRKPVESQTSSQTLSSSSPSDNAAGSRSGCGSFHSLPLHSTGSGETLSLGNNMSQLQMGRGPLSDSVTKKEYRSEQKLDGDKHFSQEGLQNARFRQAEVESHIFFQDGSENARHHGVLRTSESTWPDISQISSNSLAESRSASFMAGNCFQLQTNQEVEPLKANTATSNQPVFNIELGMARFAQPTQDLFSEWHRKTDFSRTAIDDEPHKDSVHNSDVNVNWGGSFLMTTQK* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00472 343 MobiDBLite consensus disorder prediction 177 194 - -
Pte10g00472 343 PANTHER GROWTH-REGULATING FACTOR 5 12 306 IPR031137 GO:0005634|GO:0006351|GO:0032502
Pte10g00472 343 MobiDBLite consensus disorder prediction 74 194 - -
Pte10g00472 343 Pfam WRC 75 117 IPR014977 -
Pte10g00472 343 MobiDBLite consensus disorder prediction 116 173 - -
Pte10g00472 343 ProSiteProfiles WRC domain profile. 74 118 IPR014977 -
Pte10g00472 343 Pfam QLQ 14 47 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pte10g00472 343 SMART QLQ_2 12 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pte10g00472 343 ProSiteProfiles QLQ domain profile. 13 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pte10g00472 343 MobiDBLite consensus disorder prediction 74 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00472 Pte-Chr10 4205824 4209693 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00472 1 117 GRF Transcription Factor Family AT3G13960 57.025 5.57e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Pte10g00472 WRC 1.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00472 - - qsa:O6P43_033410 320.857