Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00451 ATGGTAGAAGGAAGGGTTTTTTCATCCAAAGAAGCTAGAGATGGGTTAGAATTCTTAAGGCGTAAAAGGCTCGAGCGTATGAGATCAGCAACTGTCACAGACACTATTGGTGTCAATAACATGATGACCAGAAGTGGGGGAGATGCTTTAAGAGCTTCTGCATCCTGTGGTGTGAGATTGGAGGATAGTGCAGATCTCTTTTGTAAGCACAAAGTGGATAAGTTTGACACAAGCGATCTAGATTGGACTGAGAAAATTCCGGAGTGTCCTGTATATTCTCCAACAAAGGAGGAATTCAAGGATCCATTGCTTTATTTGCAGAAGATAGCTCCTGAAGCTTCTAAACATGGTATATGCAAGATTGTATCACCTTTGACTGCTTCTGTCCCTGCGGGAGTTGTGTTGATGAAGGAACAAGTGGGATTCAAGTTTACGACTAGAGTGCAACCACTTCGTCTTGCAGAATGGGACTCCGATGACAAGGTCACATTTTTTATGAGTGGAAGAAATTATACCTTTCATGATTTCGAGAAGATGGCAAACAAAATTTTTGCACGTAGATACTGCAGTGCAGGAAGTCTTCCTCCCTCATTCATGGAAAAAGAATTCTGGCATGAAATTGCTTGTGGGAAGACAGAAACTGTTGAATACGCATGTGATGTTGATGGTAGCGCATTTTCATCTTCTCCTGCTGATGAGCTTGGAAATAGTAAATGGAACTTGAAGGTATCAGTTATATTCTCAGTTTGTTGCGTTAAGTTCTGTAACATCTGCTGTTTACGTTTCCAATTTCACGAACTGATGCATATACACACATTCCACAACTGTTGCTCTCAGAAACTTTCGCGGTTGCCCAAGTCTATTTTGCGCCTACTTGAGACAGTGATTCCGGGAGTCACAGAACCTATGCTGTACATCGGGATGCTGTTTAGTATGTTTGCATGGCATATTGAGGATCATTACTTGTACAGCATCAATTATCACCATTGTGGAGCTTCAAAAACTTGGTATGGAGTTCCTGGTCATGCAGCATTGGAATTTGAAAGGGTGGTCAGACAACACGTATATACTAGGGACATCCTATCAAGTGAAGGAGAAGATGGAGCTTTTGATGTGCTATTGGGGAAAACAACTCTGTTTCCTCCAAACATTCTGTTGGAACATAAAGTTCCTGTTTACAAGGCTGTCCAAAAGCCGGGGGAATTTATAATTACCTTCCCTAGGGCGTATCATGCTGGTTTTAGCCATGGCTTTAATTGTGGTGAAGCTGTCAACTTCGCAATTGGTGATTGGTTTCCTCTGGGTGCAATTGCTAGCCGACGTTATGCAGTTCTTAACAGAGTACCTTTACTTCCTCATGAAGAGCTTTTGTGCAAGGAAGCAATGATTCTCCATTCAAGCATAGACCTTGAAGATACAGACAGTTCATCTGTAGACATGCTGTCACAACATAGCATAAAAGTTGCTTTTATTAATCTGATGCGGTTCCAGCATTGTGCACGCTGGTCCCTAATGAAATCAAGAGTTTGTGTGGGTATTGTTCCAAATCCACACGGGACAATTGTGTGCAGTTTCTGCAAACGTGATTGCTATGTAGCGTATGTGAATTGCAACTGTCACATGCACCCAATGTGCCTTCGCCATGATATGGAGAAACTTGACTTAAATTGTGGAAACACATATACACTCTTTTTAAGAGAGGATATTTTGGGACTTGAAGCTGCAGCTAGGAGTTTTGAGTGTGAAATTGGACTGTCTGGTGACATAATCAGGAGAGCCAACAGTGATGGAAACTTGTATTCGTGTCCACAGTTGAACATCTTTCTAAATGCTGAAGAAGCAGGATATACTCCTTATTGTGAAATAGAAGTGGTTTCACAAAAGGAAGAGCGTATCTCAAATACTTGGTCAACTTTGACGCAATGCTCTGGAGATCTCAGACCTGATGTGCGGCAGGTTTCTCTAGTTTCTTCTTCATCAGCTCTCACTTCTGCTTCATCAACAATGTTTCCTTTTCAAGAACCTCTTGGGAGAATATCTGCTCATATAAATGATGCGGGACACGCCAATATTTGCTCAAGTGTAGGAAATACTCAAGAGTTCTTTCATTCTCAGAGTTTATGTGAGTCTTCATTGTCCTCCACTCAAAGTCAGGAAAGCTGGAGTAAACATCCATGTGATGGTCATAGGTTAGATGTTACCCCTACAGGGTACAATGGTAGTGATGATTCTGATTCAGAAGTTTTTAGGGTCAAACGTCGGCCATTATTGAAGGTGGTAAAAAGAAATGTGAATTCCTCCATGTATTCAAAGCATCATTCCGAGCACCAGGGAATTAGACGGCTGAAGAAAGTTCCTCCTGAAGATAAACATGACTTTTCGTTTGACTCCAGCAAAGCTGCTGATCAATCGAGCTGTAGACCTGGCCATCATACTAATAATCAAGCTCAATGCGAAAATGCTTTTCCGGACGAGTTTTCAAGAGGAAGTAGCATTCCAATCTCTATCAAGCTTAAGAAGCTAGGCCGTGAGGAAGCAATAGTAAGACAGAGGGAGCAACACATGAGAAAAGACCGGGCGCATCAATGTATGAGGGGAGCACCGCCTTCAGAGATTGGGCATAAGCGCCTTAAAGTGAGAGGTCCTTCATTTCAGGGAACAGAGAGCAGATTGTATTGA 2679 0.4211 MVEGRVFSSKEARDGLEFLRRKRLERMRSATVTDTIGVNNMMTRSGGDALRASASCGVRLEDSADLFCKHKVDKFDTSDLDWTEKIPECPVYSPTKEEFKDPLLYLQKIAPEASKHGICKIVSPLTASVPAGVVLMKEQVGFKFTTRVQPLRLAEWDSDDKVTFFMSGRNYTFHDFEKMANKIFARRYCSAGSLPPSFMEKEFWHEIACGKTETVEYACDVDGSAFSSSPADELGNSKWNLKVSVIFSVCCVKFCNICCLRFQFHELMHIHTFHNCCSQKLSRLPKSILRLLETVIPGVTEPMLYIGMLFSMFAWHIEDHYLYSINYHHCGASKTWYGVPGHAALEFERVVRQHVYTRDILSSEGEDGAFDVLLGKTTLFPPNILLEHKVPVYKAVQKPGEFIITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASRRYAVLNRVPLLPHEELLCKEAMILHSSIDLEDTDSSSVDMLSQHSIKVAFINLMRFQHCARWSLMKSRVCVGIVPNPHGTIVCSFCKRDCYVAYVNCNCHMHPMCLRHDMEKLDLNCGNTYTLFLREDILGLEAAARSFECEIGLSGDIIRRANSDGNLYSCPQLNIFLNAEEAGYTPYCEIEVVSQKEERISNTWSTLTQCSGDLRPDVRQVSLVSSSSALTSASSTMFPFQEPLGRISAHINDAGHANICSSVGNTQEFFHSQSLCESSLSSTQSQESWSKHPCDGHRLDVTPTGYNGSDDSDSEVFRVKRRPLLKVVKRNVNSSMYSKHHSEHQGIRRLKKVPPEDKHDFSFDSSKAADQSSCRPGHHTNNQAQCENAFPDEFSRGSSIPISIKLKKLGREEAIVRQREQHMRKDRAHQCMRGAPPSEIGHKRLKVRGPSFQGTESRLY* 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00451 892 SMART JmjN_1 88 129 IPR003349 -
Pte10g00451 892 Pfam jmjN domain 90 122 IPR003349 -
Pte10g00451 892 Gene3D Cupin 89 487 - -
Pte10g00451 892 SUPERFAMILY Clavaminate synthase-like 281 459 - -
Pte10g00451 892 ProSiteProfiles JmjN domain profile. 89 130 IPR003349 -
Pte10g00451 892 MobiDBLite consensus disorder prediction 853 874 - -
Pte10g00451 892 MobiDBLite consensus disorder prediction 798 821 - -
Pte10g00451 892 MobiDBLite consensus disorder prediction 718 746 - -
Pte10g00451 892 ProSiteProfiles JmjC domain profile. 273 443 IPR003347 -
Pte10g00451 892 SMART cupin_9 273 443 IPR003347 -
Pte10g00451 892 MobiDBLite consensus disorder prediction 780 797 - -
Pte10g00451 892 Pfam JmjC domain, hydroxylase 303 426 IPR003347 -
Pte10g00451 892 MobiDBLite consensus disorder prediction 762 824 - -
Pte10g00451 892 PANTHER LYSINE-SPECIFIC DEMETHYLASE 82 848 - -
Pte10g00451 892 Pfam C5HC2 zinc finger 523 574 IPR004198 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00451 Pte-Chr10 3917105 3924698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00451 86 461 JUMONJI Transcription Factor Family AT1G30810 33.962 1.49e-55 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pte10g00451 JmjC 1.1e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00451 - - qsa:O6P43_025118 1149.04