Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00448 ATGTCAGGTAACAGAACAGGATACAGAGGACGAGGGCGAGGAAGAGGAAGAGGGGTCGATCATGTAGGAGACGATGAGAGCCTGATTGTGACACCTCTGCTTAATCAGGACTACCCAGCTCAGATGAGTCCACAAAGACTCCAAATTCATCCAGTACCTTCTACTTCTCAGTCTCCGAAATCTGGAGGGAGTTCAAGTGTTGGTCCACATAACAGCAAACGTAACCGAAATTCCAGGCGGGGATCCCAGAATCGACATGACCGTGTGATAAAACCAGTGTTTGTTAAGAAATCTGAACTGGAGTCATTGCATCATGAGGTGGTCTCGTTGGATCGTGAAGTCGATTCTTTAAATATTGGAGAGAGAGTGAAGGGGGCTAAAGTGATCGAAAATTGTGAAGAAGGCAACGGCGCTTCGGTGTCAAGCAGGGAGGTATCTCGAGTGAGTAAGGGAGAAGATAATGTTGAAAGTAGATTGGACGAGTTGCAGATGGCGGTGGAAGAACCTGAATTGTCGGAGGAGCAACTGAGGATCAACGACCAATTGCAGGAGGACGAGTTACTTGTAGTAGAGTCTATCTATGGAGAAAATGTTTACAACCTTGACAGGCGGAAAGGTCTACGATGCATTCAGATATACATTCACGTTGAGGTTCCAGATCATGTACCCATCACAGCTACAATAAATTCTTCAAATGAATCAGTTGCGAATGGGAAATGTTCCAATGAATTCCTATACACTTTCAAAGTGCAATATCTTCCACCTATTGTTTTGACTTGTCTATTACCTAAATCCTACCCAAGCCATCTACCACCTATTTTTACAGTAGCTGTTCGGTGGTTGGATGCTGTGAGGATTTCTGGCCTATGCTCACAGCTGGATTCAGTATGGGCAGAACAACAGGGTAAAGAAGTCCTGTATCAGTGGGTAGAATGGTTACATGGTTACTCCCTTTTACATCTTGGTTTTAATGATGGGATAACTCTTGGTCCTTATGGCTCCAAACAAGTTGCAGATAGGCGTGCTTTTTCTGAAACCATTTCTCCAAATGTGGATATTCCCTCTTTGAAGAATTATAACGATGAGAAACATCGTGAGAACTTCAGCAAAGAACTGCATGTGTGTGATATCTGTTTCAGTGAGTATGCAGGTGCTGATTTTGTTAGATTGCCTTGTAAGCATTTCTTTTGCTGGAAATGCATGAAGACATACTCTAACATGCATGTAAAGGAGGGCACTGTAAATCATCTTTCTTGTCCTGAATCAAAATGCGCAGCTATGATCCCACCAGGTTTATTAAAATGTTTGCTTGGTGATGAAGCATTTGAGCGCTGGGAATCCTTACTGTTGCAAAAAACGCTTGATTCAATGTCTGATGTGACTTATTGTCCAAGGTGTGAAACACCCTGTATAGAGGATGAAGAAAATCATGCACAATGCCAAAAGTGCTTCTTCAGTTTCTGTACACTTTGCAGGGAGCGACGTCATCTGGGTGTAGAATGCATGGCACCTGAAGTAAAGCTCCGTGTGTTAGAGATGCGGCAGAACTCATCTCAAGTAAACGAAGACCAGAAAATGAAAGAACGTCGAATGATTGAAGAGATTATGTGCATGAGAGAAATACTTGATAATGCTAAGCAATGCCCACAATGTAGGATGGCAATTCATAAAACTGGAGGTTGCAACAAAATGGTTTGTGGAAATTGTGGACAGTATTTCTGCTATCGCTGTAATAAAATAATTGATGGATATGATCATTATAGGGATGGGAATTGCGAGTTGTTTCCGATTGAAACGATCCATCAGTGGGAGGAAATGAATCAGCGCCAAGTGATTGGACGGATGCAAGCTGGATTCCATCCACAAAAGGGTCAGCGATGTCCCAATTGCCGTCAGTTTAATGCAAAGGTAGACAACAACACTCACATCTCCTGCTGGGCGTGCCAAGTTCATTTCTGCTACGTGTGCAAAAAGATTGTCCGGCGAGCTTCTGAGCATTATGGACCTAGGGGCTGCAAACAGCACACTGAGGACTAA 2037 0.433 MSGNRTGYRGRGRGRGRGVDHVGDDESLIVTPLLNQDYPAQMSPQRLQIHPVPSTSQSPKSGGSSSVGPHNSKRNRNSRRGSQNRHDRVIKPVFVKKSELESLHHEVVSLDREVDSLNIGERVKGAKVIENCEEGNGASVSSREVSRVSKGEDNVESRLDELQMAVEEPELSEEQLRINDQLQEDELLVVESIYGENVYNLDRRKGLRCIQIYIHVEVPDHVPITATINSSNESVANGKCSNEFLYTFKVQYLPPIVLTCLLPKSYPSHLPPIFTVAVRWLDAVRISGLCSQLDSVWAEQQGKEVLYQWVEWLHGYSLLHLGFNDGITLGPYGSKQVADRRAFSETISPNVDIPSLKNYNDEKHRENFSKELHVCDICFSEYAGADFVRLPCKHFFCWKCMKTYSNMHVKEGTVNHLSCPESKCAAMIPPGLLKCLLGDEAFERWESLLLQKTLDSMSDVTYCPRCETPCIEDEENHAQCQKCFFSFCTLCRERRHLGVECMAPEVKLRVLEMRQNSSQVNEDQKMKERRMIEEIMCMREILDNAKQCPQCRMAIHKTGGCNKMVCGNCGQYFCYRCNKIIDGYDHYRDGNCELFPIETIHQWEEMNQRQVIGRMQAGFHPQKGQRCPNCRQFNAKVDNNTHISCWACQVHFCYVCKKIVRRASEHYGPRGCKQHTED* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00448 678 CDD Rcat_RBR_RNF14 544 595 IPR047548 GO:0008270
Pte10g00448 678 CDD RING-HC_ITT1-like 369 428 - -
Pte10g00448 678 ProSiteProfiles RWD domain profile. 185 320 IPR006575 GO:0005515
Pte10g00448 678 SMART ring_2 375 422 IPR001841 -
Pte10g00448 678 SMART ring_2 548 630 IPR001841 -
Pte10g00448 678 MobiDBLite consensus disorder prediction 50 72 - -
Pte10g00448 678 SUPERFAMILY RING/U-box 370 456 - -
Pte10g00448 678 SUPERFAMILY RING/U-box 623 676 - -
Pte10g00448 678 MobiDBLite consensus disorder prediction 1 24 - -
Pte10g00448 678 ProSiteProfiles TRIAD supradomain profile. 371 598 IPR044066 -
Pte10g00448 678 Pfam RWD domain 181 314 IPR006575 GO:0005515
Pte10g00448 678 Gene3D Ubiquitin Conjugating Enzyme 172 320 IPR016135 -
Pte10g00448 678 SUPERFAMILY RING/U-box 534 588 - -
Pte10g00448 678 CDD BRcat_RBR_RNF14 454 507 - -
Pte10g00448 678 MobiDBLite consensus disorder prediction 50 89 - -
Pte10g00448 678 SMART ibrneu5 530 592 IPR002867 GO:0008270
Pte10g00448 678 SMART ibrneu5 443 501 IPR002867 GO:0008270
Pte10g00448 678 FunFam RBR-type E3 ubiquitin transferase 370 454 - -
Pte10g00448 678 Gene3D - 518 618 - -
Pte10g00448 678 SUPERFAMILY RING/U-box 443 504 - -
Pte10g00448 678 Pfam Zinc finger, C3HC4 type (RING finger) 375 420 IPR018957 GO:0046872
Pte10g00448 678 Pfam IBR domain, a half RING-finger domain 443 501 IPR002867 GO:0008270
Pte10g00448 678 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 217 590 IPR031127 GO:0004842|GO:0016567
Pte10g00448 678 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 369 459 IPR013083 -
Pte10g00448 678 FunFam RBR-type E3 ubiquitin transferase 516 621 - -
Pte10g00448 678 ProSiteProfiles Zinc finger RING-type profile. 375 423 IPR001841 -
Pte10g00448 678 SUPERFAMILY UBC-like 179 315 IPR016135 -
Pte10g00448 678 ProSitePatterns Zinc finger RING-type signature. 392 401 IPR017907 -
Pte10g00448 678 SMART RWD2001b 185 320 IPR006575 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00448 Pte-Chr10 3891374 3896463 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00448 375 611 C3H Transcription Factor Family AT2G31770 25.101 4.00e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00448 K11971 - cave:132176313 830.091