Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00425 ATGAAGAAAAGGAGACTCTTCATTTGGTGCTTTCTGGGAATGATAGTGCAGATGTTTTGCATGTTTGCTGATTCCGCCCAGAAGACTCAGTTAGAAACTATTGATTCCGGCCGAAAGCATTTGACTTTAGGATCTGCTGTTGAGCTGCATGCCTCAAACAACCAACAGGTGGTGTTAGATAATGGACTTGTCCGTGTAATTCTGGCGAATCCCGAGGGACATGTGCTGGGAGTGACATATCAACGAGTAGACAATGTTCTTGAATCTCATAACGATGAAGATGATAGAGGGTATTTGGATGTGGTCTGGAATGAGCCCGGAGGTCATAGTACATTTGAGAGAATAAAAGGGACAACATTTCATGTTGTAATGGAAAGCGAGGATCAAGTAGAGGTGTCATTTCAAAAGACATGGGATATTTCCTTGCGTGGCTCAAGTGTTCCTTTGAACGTCGATAAGAGGTACATACTGCAACGAGGAAGTTCAGGATTTTACTCCTACGCCATTTTTGAGAGGCCGGAAGGATGGCCTGCTGTGGAGATTGATCAAATTAGAATAGTTTACAAGTTGCAAGAGAGCATGTTCCACTATATGTCTGTCTCCGACGAAAGGCAAAGAACCATGCCAATGCCAGAGGATCGTGCAACGGGTCAGCCACTTGCTTACCCTGAGGCTGTTCTCTTGACCAATCCTGCTAACCCTGACCTCAGAGGAGAGGTGGATGACAAATACCAATATTCTTGTGAGAACAAAGAAAACAGAGTACACGGGTGGATCAGCACGGATGCCAATCGAGACAATTCCTTGGGTTTCTGGATGATTACACCTAGCAATGAGTTTCGTAATGCTGGGCCAATCAAGCAAGACCTCACTTCCCATGTTGGCCCCGTCGTCCTCTCGATGTTTGTGAGCACCCACTACGCAGGGAAGGAAGTTACCATGGCGTTTCAAGATGGTGAACCTTATAAAAAGGTCTTTGGTCCTGTTTATACATATCTTAATTCTATTTCAAGTGAAGACAACAGCCTCACACTTTGGATTGATGCTAAAAGAAAGATGATAGCTGAAGTCAGAAGCTGGCCCTATGATTTTCCTCAATCTGAAGATTATCTTCCAGCTCCTCAAAGGGGAAACGTTGCTGGGCAATTACTTGTAGAGGACAAGTATATCAATGGGGGACTATTGAGTGCTAGCTCTGCTTTTGTTGGTCTTGCTCTACCCGGAGAAGTAGGATCGTGGCAAAGAGAAAGCAAGGGGTATCAATTTTGGACTCGTGCTAACAAGAGAGGATACTTCATAATCTCAAACGTTCTACCTGGTAACTACAATTTGTACGCATGGGTCCCTGGCGTAATGGGTGATTACAAATATGAGACTGTCATTGACATCACGCAAGGGTGTAAGATCAAATTGGGTCCCTTGGTGTACAGACCACCAAGAAATGGTCCTACCCTTTGGGAAATCGGGATTCCAGATCGCACAGCTGCAGAGTTTTATATACCCGATCCATACCCGACTCTCATGAACCAATTGTACAACAACGACCGTACCGACAAATTTAGGCAATATGGCTTGTGGGAACGTTATGCAGATTTGTATCCAAACAGCGATCTCGTATACAATGTTGCAGTTGATGATTATCGCAAAGATTGGTTTTTCGCTCATGTTACCAGAGACATAGGAAATAGGACATACCAATCCACCACATGGCAAATTGTATTTGGACTTGTAAATGTGAACGCTGTGGGAACGTACACACTCCAGCTGGCTTTGGCATCTGTTACTGACTCTAACTTGCAGGTACGGATTAATGACCCGAAAATGGAGCCTCCTCACTTTTCTACGGGACCAGTTGGCAAAGACAACGCCATAGCAAGACACGGCATTCATGGATTGTATTGGCTGCACAGCATTCATATACCTGGGGATCTACTTGTAAATGGAAACAATACAATCTACTTAACACAGTCAAGGAACTTGACAGCGTTTGCTGGAATTATGTATGATTATATACGTTTAGAAAGTCCTGCGTAA 2034 0.441 MKKRRLFIWCFLGMIVQMFCMFADSAQKTQLETIDSGRKHLTLGSAVELHASNNQQVVLDNGLVRVILANPEGHVLGVTYQRVDNVLESHNDEDDRGYLDVVWNEPGGHSTFERIKGTTFHVVMESEDQVEVSFQKTWDISLRGSSVPLNVDKRYILQRGSSGFYSYAIFERPEGWPAVEIDQIRIVYKLQESMFHYMSVSDERQRTMPMPEDRATGQPLAYPEAVLLTNPANPDLRGEVDDKYQYSCENKENRVHGWISTDANRDNSLGFWMITPSNEFRNAGPIKQDLTSHVGPVVLSMFVSTHYAGKEVTMAFQDGEPYKKVFGPVYTYLNSISSEDNSLTLWIDAKRKMIAEVRSWPYDFPQSEDYLPAPQRGNVAGQLLVEDKYINGGLLSASSAFVGLALPGEVGSWQRESKGYQFWTRANKRGYFIISNVLPGNYNLYAWVPGVMGDYKYETVIDITQGCKIKLGPLVYRPPRNGPTLWEIGIPDRTAAEFYIPDPYPTLMNQLYNNDRTDKFRQYGLWERYADLYPNSDLVYNVAVDDYRKDWFFAHVTRDIGNRTYQSTTWQIVFGLVNVNAVGTYTLQLALASVTDSNLQVRINDPKMEPPHFSTGPVGKDNAIARHGIHGLYWLHSIHIPGDLLVNGNNTIYLTQSRNLTAFAGIMYDYIRLESPA* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00425 677 CDD RGL4_C 486 674 - -
Pte10g00425 677 Pfam Rhamnogalacturonate lyase family 45 240 IPR010325 -
Pte10g00425 677 Pfam Polysaccharide lyase family 4, domain III 484 673 IPR029411 -
Pte10g00425 677 SUPERFAMILY Galactose-binding domain-like 481 674 IPR008979 -
Pte10g00425 677 SUPERFAMILY Starch-binding domain-like 371 458 IPR013784 GO:0030246
Pte10g00425 677 FunFam Rhamnogalacturonate lyase B 372 471 - -
Pte10g00425 677 SUPERFAMILY Galactose mutarotase-like 151 341 IPR011013 GO:0003824|GO:0005975|GO:0030246
Pte10g00425 677 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 49 676 - -
Pte10g00425 677 Pfam Polysaccharide lyase family 4, domain II 398 470 IPR029413 -
Pte10g00425 677 CDD RGL4_N 50 342 - -
Pte10g00425 677 CDD RGL4_M 375 474 IPR029413 -
Pte10g00425 677 Gene3D - 51 338 IPR014718 GO:0030246
Pte10g00425 677 Gene3D - 482 674 - -
Pte10g00425 677 Gene3D - 371 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00425 Pte-Chr10 3693467 3698619 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00425 46 676 Polysaccharide Lyase AT1G09910 56.714 0.0 758
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00425 K18195 - qsa:O6P43_033271 952.97