Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00421 ATGGGAAGAGGCAAGATTGTGATCCGGAGAATCGACGATACTGCAAGTAGGCAAGTAACCTTCTCGAAGCGAAGAAAGGGATTGATGAAGAAAGCTAAGGAGCTGGCTGTTCTGTGCGATGCGGAGGTCGGACTTGTAATATTCTCTAGTACTGGGAAGCTCTCCGAATATGCAAGCACCAGCATGAAAACCTCGATCGAGAGGTACAACAAAGTCAAAGACGAATTTGAACTCTCGAATCCAGAATTAGAGATAAAGGTTTTGCAAAGGGAAGCAGAAACCTCCAGGCAGCGACTGAAGAACTTGCAAGAAAACCATCGGCAACTGATGGGAGAGCAGCTTAATGGCTTGACGGTCAAGGACTTGCAAAATCTAGAGAATCGTATGGAAATGAGCCTAAGAGAAGTCCGGATGAAAAAGGTCAACTATTCTTTCAACCAACACCACCAAATTTCTATATTTCTAGTTAACCTTATTCATCTTGAAAATCTTGAGCTCAACCAAAAATTGAATGTCCTTAGACAAGAAAACATGGAACTAAACGGGAAGGTATGCGCTTCAACTAATGTGGTTTCCAAGAGTAAAAACACTTTTGCTCCATATGCTGTCCATGCTGTACAAGAATCAGATCTTCCAATCCAACTTCGGTTATGCCAGCCTGACCAACAATTTGATGAGACATCAACTGGAAGCAGCAACTTAAAAGGCAAACTGTGTTCACAAATTGGAAACTTTGTTTTTGGATAA 747 0.419 MGRGKIVIRRIDDTASRQVTFSKRRKGLMKKAKELAVLCDAEVGLVIFSSTGKLSEYASTSMKTSIERYNKVKDEFELSNPELEIKVLQREAETSRQRLKNLQENHRQLMGEQLNGLTVKDLQNLENRMEMSLREVRMKKVNYSFNQHHQISIFLVNLIHLENLELNQKLNVLRQENMELNGKVCASTNVVSKSKNTFAPYAVHAVQESDLPIQLRLCQPDQQFDETSTGSSNLKGKLCSQIGNFVFG* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00421 248 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Pte10g00421 248 Gene3D - 13 77 IPR036879 GO:0003677|GO:0046983
Pte10g00421 248 Coils Coil 163 183 - -
Pte10g00421 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pte10g00421 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 171 - -
Pte10g00421 248 SUPERFAMILY SRF-like 2 73 IPR036879 GO:0003677|GO:0046983
Pte10g00421 248 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte10g00421 248 Pfam K-box region 86 183 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte10g00421 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte10g00421 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte10g00421 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte10g00421 248 ProSiteProfiles K-box domain profile. 85 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte10g00421 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte10g00421 248 Coils Coil 122 142 - -
Pte10g00421 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte10g00421 248 Coils Coil 85 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00421 Pte-Chr10 3640102 3643486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00421 1 231 MADS-box Gene Family AT2G22630 54.077 6.58e-76 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte10g00421 K-box 1.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00421 K09264 - qsa:O6P43_033289 258.84