Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00414 ATGAGCCCGGTGAGCATTTTGGAAGCGACAAAGGGTATGCCCCTCAGATACAAACCTACGTCTTGGTGTGGCTTTTTCTTGTTAAGTACAGACCTTTTCCGGACCACATTCGCAGATTCTCTCGACATATCTTGGAATACAGAGATGGAGCTTACTCAACATGGTTTCTTTGAGGAGCTGCTAGCAACAGCTCCAAGATCAGAGAGCTGGAATACTTTCTCCACTGGGTTGATTGAGGTATTCCCTAATGGTTGGAGCTTTGAAGCTTCAGATGAGAGCCCAATTTTAGATGCTGGTCCATATACTCCATTGGCTGCTACATTCTCAACCCCAATAGAACATGGCTTCCAATGTCCCCTGGGCAGTGAAGCAGCGTACTCTTACTTCGATGGGTTCACATTGCAAGACATTAATTCATCTTACACCAGAAATGGTATAACACCATTCCCAACACAAGAAGATAAAGAAGGCAACCCCTCCATGGTGGATGATGATCACGAGCTTGGCTTTCTTGGAGGTGGAGATCACATTGCCGAAGTAACAAAAAATGACTGCAAACTTGAATTGGACCAAGCAACTGGGGCTGCAGCATTCGATATGAGATTTTGCTCAGAGAAAAAAATCAAGGCCAAGAAGTTGGAGGGACAGCCCTCAAAAAATCTCATGGCAGAAAGAAGGCGAAGGAAACGCCTCAATGACCGGCTTTCAATGCTTAGATCGATAGTCCCTAAGATAAGCAAGATGGACAGGACATCTATTCTTGGAGACACCATAGACTATGTGAAAGAGCTCAAGGAAAGGATCAGTAGGTTGCAAGAAGAACTAGAGGAGGGTGCAGATCAAAGTCAAATAACACCGTTGATGATTGCCACAGGGATAACCCCAAATGAAGCACTGGTCAAGAATTCCCCCAAGTTTGATGTAGAGAAAAAAGAGTTCGAAACCCGGATTAGTATTTCTTGTGCACCAAAGCCTGGATTGTTGCTGTCAACTGTTAACACACTTGAAGCATTTGGCCTGGAAATTAAACAATGTGTTATCAGCAGCTTCAGTGATTTTTCAGTGCAAGCATCTTGCTCAGAGGTAGCTGAGCAACGGACAACAGCTGATGAAGACATAAAGCAAGCATTGTTCAGAAATGCAGGTTATGGAGGCAGGTGTCCATAG 1167 0.4447 MSPVSILEATKGMPLRYKPTSWCGFFLLSTDLFRTTFADSLDISWNTEMELTQHGFFEELLATAPRSESWNTFSTGLIEVFPNGWSFEASDESPILDAGPYTPLAATFSTPIEHGFQCPLGSEAAYSYFDGFTLQDINSSYTRNGITPFPTQEDKEGNPSMVDDDHELGFLGGGDHIAEVTKNDCKLELDQATGAAAFDMRFCSEKKIKAKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYVKELKERISRLQEELEEGADQSQITPLMIATGITPNEALVKNSPKFDVEKKEFETRISISCAPKPGLLLSTVNTLEAFGLEIKQCVISSFSDFSVQASCSEVAEQRTTADEDIKQALFRNAGYGGRCP* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00414 388 Gene3D - 206 281 IPR036638 GO:0046983
Pte10g00414 388 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 184 382 - -
Pte10g00414 388 SMART finulus 221 270 IPR011598 GO:0046983
Pte10g00414 388 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 215 264 IPR011598 GO:0046983
Pte10g00414 388 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 218 283 IPR036638 GO:0046983
Pte10g00414 388 Coils Coil 254 281 - -
Pte10g00414 388 Pfam Helix-loop-helix DNA-binding domain 221 264 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00414 Pte-Chr10 3592006 3593935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00414 204 387 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 64.324 7.30e-70 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte10g00414 HLH 7.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00414 - - tcc:18611397 389.808