Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00411 ATGTCTTCCTCACTGCTGGTTTCTGACGAGGATGGGCAGGGCAAGGTCTCAACTGTAGCTTCTTCATCTTTGGATAGTTCTGAATTGAAAGAACGCAACTACTTAGGATTGTCGGATTGCTCATCAGTCGACAGTTCTACTGTTCCAATTGTCACAAGAGAGAAAAATAATTGTTTGAATATGAAGGCCACAGAGCTGAGACTCGCTCTTCCTGGATCCCAGTCCCCTGATAGGGAACCAGATATCTATTCGTCAAACTCAGTGAAGCTCGACGAGAAGCCACTTTTTCCGTTGATTTCGACAAAAGATTTATCGCAAAAGAACATTGTTTCTGGAAACAAAAGAGGTTTCTCTGATACCTTAGGTAGATTCTCTGAGGTAAAATCTTCTCCTTATAATGATGTGAAATGGAAGTTACATACAGAGATTGAGTCGGATACTCCAAGGACATTGGTAGGGAAGCTTCCAAGTAAGTCTGGGATAAACATGATGCTTTCATCTAAACCTTCCTGCACTCAGCTACCTATCAAGAGAGAGGTACCAAATAAGGCATTACAGGAACAATCTCGTACTGGGAATGGTACTTCCCATAACCATACAGGTGCTCCAAACAACAATGGCACTGCACCAGCAGCCAAGGCACAAGTAGTTGGTTGGCCTCCTATAAGATCATTCCGGAAAAATTCATTAGCTACTACATCTAAAAACAATGATGAAGTTGATGGAAAACCAGGTCCAGCTGCTCTTTTCGTGAAAGTTAGCATGGATGGTGCCCCTTATTTGAGGAAAGTGGATCTTAGAACTTATTCTACATATCAAGAACTGTCCTCATCTCTTGAGAAGATGTTTGGCTGGCTTAATCTAGATCAAGGTGGATTCCAAAGAGGTCAAGGGAGAGAAATGTCAAATGAAGGCAAGGTAACTGATCTCATTCACGGATCAGAGTATGTTCTTACATACGAGGATAAAGATGGAGATTGGATGCTTGTTGGAGATGTCCCTTGGGAAATGTTCATTGAATCTTGTAAAAGGCTCAAAATCATGAAAGGATCTGATGCCATTGGCTTAGGTGTGTATCCCGTAGCAATGGCAATTGGAAAGTACTATCTTCTGTTCATCATAAATATTGCATTCACCACTAGCGTTCTTATTCTCATGTAG 1161 0.4152 MSSSLLVSDEDGQGKVSTVASSSLDSSELKERNYLGLSDCSSVDSSTVPIVTREKNNCLNMKATELRLALPGSQSPDREPDIYSSNSVKLDEKPLFPLISTKDLSQKNIVSGNKRGFSDTLGRFSEVKSSPYNDVKWKLHTEIESDTPRTLVGKLPSKSGINMMLSSKPSCTQLPIKREVPNKALQEQSRTGNGTSHNHTGAPNNNGTAPAAKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPAALFVKVSMDGAPYLRKVDLRTYSTYQELSSSLEKMFGWLNLDQGGFQRGQGREMSNEGKVTDLIHGSEYVLTYEDKDGDWMLVGDVPWEMFIESCKRLKIMKGSDAIGLGVYPVAMAIGKYYLLFIINIAFTTSVLILM* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00411 386 Pfam AUX/IAA family 64 357 IPR033389 -
Pte10g00411 386 Gene3D - 245 361 - -
Pte10g00411 386 SUPERFAMILY CAD & PB1 domains 246 349 - -
Pte10g00411 386 MobiDBLite consensus disorder prediction 1 29 - -
Pte10g00411 386 FunFam Auxin-responsive protein 243 360 - -
Pte10g00411 386 ProSiteProfiles PB1 domain profile. 248 352 IPR000270 GO:0005515
Pte10g00411 386 MobiDBLite consensus disorder prediction 184 211 - -
Pte10g00411 386 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 60 355 IPR003311 GO:0005634|GO:0006355
Pte10g00411 386 MobiDBLite consensus disorder prediction 185 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00411 Pte-Chr10 3567606 3571457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00411 250 357 B3 DNA Binding Superfamily AT1G30330 30.556 1.70e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pte10g00411 AUX_IAA 3.9e-81 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00411 K14484 - cave:132170831 464.922