Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00405 ATGAATCTTTGGACGGATGACAACTCGCTCATTATGGAAGCTTTCATAACCTCTGATCTCTCTTCTCTCTGGCCTCCACCAGCTCCTTATACCCACCACCACCACCACCACCCTTCAACTCCTACAACCACAACAGATGTTATTCTTGAACCCCCGAAAATTAGTCCTCAGTGTCAACAGTCTCTTGCCATTTTCAACGAAGAAACTGTCCAGCAACGACTCCAGGCAATTATTGAAGGTGCCCGTGAGAGCTGGACCTACGCAATTTTTTGGCAATCCTCTGGTGATTATTCTGGTTGTTCTATCTTGGTTTGGGGAGATGGATATTATAAAGGAGAAGAAGACAAAGGCAAGAGTAGAGCATGGACGAGTGCATCAGCTGCTGAGCAAGAGCATCGGAAAAAAGTCTTACGGGACCTTAATTTCTCGATTTCTGGGTCTTCCCTCTCAAATGACGCCATTGATGAGGACGTTACTGACACAGAGTGGTTTTTTCTCGTTTCTATGACGCAATCTTTTGTGAATGGGTGTGGATTACCGAGTCAAGCCTTTGTGAATGCTTCGCCAGTGTGGATTACTGGTGTAGAGGGGTTGTTGGCTTCACCTTGTGAGCGAGCTAAGCAGGCACATGTCTTTGGGCTTCAAACAATTGTTTGTGTACCTTCTGCTAACGGTGTCATTGAGATGGGATCGACTGAGTTGATTTTCGAGAGCTCAGAGCTGATGAACATGATAAGGGTTTTGTTCACTTTCAATAGTCTTGAAGTGGGTTCCTGGCCATTGAGTACCGCAAGTACAGATAAAGATGAGAACGAGCCATCATCTGTTTGGATCAGTAGCCCTCCAACTCTGAATAACTTAACTCCAAAGTTAGTTCCAAGTGTCGCAACTGACAATAGTCATGGTATGTCAAAAACAATTCAATTTGGAAACTTAGCTTCTAGTTCCATAACTGAAGCACTTAACGTAATTTCTATGCAAGACACACACCACAATCACCAAAAAAGACAGCAGTCACAACAAAATCAAACTCAGACTTTCTTTTCCAGAGAATTGAATGTCTCTGAATATAGGTTTGATGGGTCTGGTGCTGAAAATTCACACAATATGAAGCCAAAATCAGATGACGTTTTGAAGTTTGGAGAGAGTAACAATGGAGGGTCGTATAATGCAAATGTGAACTTCTATCCGAATCAGTCTCAAGTCATAGCGAAAGACAATAGGAAGAGGAGGCCACCCACCTCTAGAGGGAGTAATGAAGAAGGGATGATGTCCTTCACTTCGGGTGTGGTTTTTCCGAATGCATATGCTTTAGGGTCAGGTGGAAGTGGTGGAGACTCTGATCATTCTGATCTTGAAGCTTCTGTGGTCAAGGAGGTAGATAGCGGCAGGGTATTAGAGCCGGAGAAAAAACCACGGAAGCGAGGAAGAAAGCCAGCTAACGGTCGAGAGGAGCCTCTAAATCATGTTGAGGCAGAGCGGCAGAGACGAGAGAAGCTCAATCAGAGATTTTATGCTCTTCGAGCTGTGGTTCCTAACGTGTCAAAGATGGATAAAGCATCCTTATTAGGTGATGCTATTTCTTATATCACGGAACTGAAATCCAAGCTTCAAACTTTGGAGATAGACAAGAAAGATCTACATCAACAGTTGGAATCAGCGAAGAAGGAGCTTGAAATAGCAGAAAAGGATCCAAGATATTCTGCTCCGGGGGTGTCTCCTCCTGATCAAGAACAGAAGCTGGTAATCCCAGTTGGAAGCAAGTTGATAGATTTGGAAATAGAGGTGAAGATTATTGGTCGGGATGCAATGGTTCGAATACAGTGCAACAAGAAGAACCATCCAGCAGCGAAGTTAATGGCGGCTTTGAAGGATCTGGATTTAGAGGTGCACCATGCCACTGTCTCGGTGGTGAATGACTTAATGATCCAACAAGCCACAGTGAAGACGGGAAGTCGATTCTACACACAGGAACAACTTAGGTCGGCCCTATCATCAAAAGTAAATGATAGCCAACGGGATGGATCTCCAACTGTGGGATGGTGA 2046 0.4433 MNLWTDDNSLIMEAFITSDLSSLWPPPAPYTHHHHHHPSTPTTTTDVILEPPKISPQCQQSLAIFNEETVQQRLQAIIEGARESWTYAIFWQSSGDYSGCSILVWGDGYYKGEEDKGKSRAWTSASAAEQEHRKKVLRDLNFSISGSSLSNDAIDEDVTDTEWFFLVSMTQSFVNGCGLPSQAFVNASPVWITGVEGLLASPCERAKQAHVFGLQTIVCVPSANGVIEMGSTELIFESSELMNMIRVLFTFNSLEVGSWPLSTASTDKDENEPSSVWISSPPTLNNLTPKLVPSVATDNSHGMSKTIQFGNLASSSITEALNVISMQDTHHNHQKRQQSQQNQTQTFFSRELNVSEYRFDGSGAENSHNMKPKSDDVLKFGESNNGGSYNANVNFYPNQSQVIAKDNRKRRPPTSRGSNEEGMMSFTSGVVFPNAYALGSGGSGGDSDHSDLEASVVKEVDSGRVLEPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYITELKSKLQTLEIDKKDLHQQLESAKKELEIAEKDPRYSAPGVSPPDQEQKLVIPVGSKLIDLEIEVKIIGRDAMVRIQCNKKNHPAAKLMAALKDLDLEVHHATVSVVNDLMIQQATVKTGSRFYTQEQLRSALSSKVNDSQRDGSPTVGW* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00405 681 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 484 533 IPR011598 GO:0046983
Pte10g00405 681 PANTHER MYC 60 667 IPR045084 GO:0003700|GO:0006355
Pte10g00405 681 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 487 553 IPR036638 GO:0046983
Pte10g00405 681 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 71 249 IPR025610 -
Pte10g00405 681 FunFam Transcription factor bHLH13 477 551 - -
Pte10g00405 681 MobiDBLite consensus disorder prediction 388 424 - -
Pte10g00405 681 SMART finulus 490 539 IPR011598 GO:0046983
Pte10g00405 681 Gene3D - 476 564 IPR036638 GO:0046983
Pte10g00405 681 Pfam Helix-loop-helix DNA-binding domain 488 533 IPR011598 GO:0046983
Pte10g00405 681 MobiDBLite consensus disorder prediction 456 494 - -
Pte10g00405 681 CDD bHLH_AtAIB_like 481 557 - -
Pte10g00405 681 Coils Coil 530 564 - -
Pte10g00405 681 MobiDBLite consensus disorder prediction 388 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00405 Pte-Chr10 3524214 3526396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00405 1 668 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 50.511 0.0 565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte10g00405 bHLH-MYC_N 5.8e-51 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00405 K13422 - vvi:100250607 798.119