Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00400 ATGGCAGCAGCAATCACAAATTCGCTTCCCTTCTCGGCTCACACTTCCACTTCCTCCTTGTACAGCTTCAAATCTAAACTCTCGTCATCTCTCAAACCACCCCATTCTAACAAGCTTCGCGTCTCCAATTCGCTTCCTTCTATCCTCCCCATTTTCCAAAATGCCACCATTTTCCCGCTTCCGCTATCTTCTAAAAACCCAACTACGAAGCTCAGCTTTGGGAGTTTCTGTTCGTTGCAGGACACAATAGTGGAAGAGAAAACAGATGAAACCCAGGAAACCAACGTCAAGAGGAAACTGTGCGTGCTTAATTTGCCGTGGTCTTTATTATCAGTTGCGGAAATCAGAGAGCTTTTTGGGCAATGCGGAACCGTAAACGACGTTGAGATAATTAAACACAAAAACGGAACAGGTCGAGGTTTCATCTTCGTAACCATGGATTCTGGGGAACAAGCACAAGCAGTTATCGACAAATTTGATTCCCAAGAAATAGAAGGTAGGGTGATAAGGGTAGAGTTTGCAAAAAGATTGAAGAAACCTTCTTCAAGTTCATCAGTTACCACTCCTGGAGAGACACGACATAAAATTTACGTGTCAAATCTACCCTGGAAAGCAAAATCAGCCTATCTCCGTGATTTCATTACTGAGAATTTTAAACAACCGGCTTCAACTAAGGTTGTTGGTAGTCCTAATGGGAGATCTGCTGGGTATGGTTTTGTTTCTTTTCTCACAGAGGAAGAAGCTGACGCTGCAATTTCTGCTTTGGAGGGGAAGGAGTTCATGGGACGACCTCTTCGTCTGAAATTGAGTCAAAGGAGTGTTGAATCTGACTCTGAGAACCAAGAGCAAATCTCTGATGATCAATCAGAACAATCCTAG 879 0.4346 MAAAITNSLPFSAHTSTSSLYSFKSKLSSSLKPPHSNKLRVSNSLPSILPIFQNATIFPLPLSSKNPTTKLSFGSFCSLQDTIVEEKTDETQETNVKRKLCVLNLPWSLLSVAEIRELFGQCGTVNDVEIIKHKNGTGRGFIFVTMDSGEQAQAVIDKFDSQEIEGRVIRVEFAKRLKKPSSSSSVTTPGETRHKIYVSNLPWKAKSAYLRDFITENFKQPASTKVVGSPNGRSAGYGFVSFLTEEEADAAISALEGKEFMGRPLRLKLSQRSVESDSENQEQISDDQSEQS* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00400 292 PANTHER OS02G0815200 PROTEIN 38 271 - -
Pte10g00400 292 Gene3D - 80 188 IPR012677 -
Pte10g00400 292 Gene3D - 189 292 IPR012677 -
Pte10g00400 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 176 IPR000504 GO:0003723
Pte10g00400 292 SUPERFAMILY RNA-binding domain, RBD 182 277 IPR035979 GO:0003676
Pte10g00400 292 CDD RRM_SF 100 172 - -
Pte10g00400 292 SUPERFAMILY RNA-binding domain, RBD 90 181 IPR035979 GO:0003676
Pte10g00400 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 272 IPR000504 GO:0003723
Pte10g00400 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 266 IPR000504 GO:0003723
Pte10g00400 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 170 IPR000504 GO:0003723
Pte10g00400 292 SMART rrm1_1 195 268 IPR000504 GO:0003723
Pte10g00400 292 SMART rrm1_1 99 172 IPR000504 GO:0003723
Pte10g00400 292 MobiDBLite consensus disorder prediction 270 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00400 Pte-Chr10 3453690 3456093 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00400 83 279 Eukaryotic Initiation Factors Gene Family AT1G22760 25.888 6.21e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00400 - - qsa:O6P43_025150 266.929