Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00399 ATGGCTCTAGATGCTTTTTCTTCAGCTTCCAACGATCTTTTCAACTTTATTATTTATGACACTCTGGCCACAACCCCTATTGCTAGTCATCACGCTAATTCAGAGTATAGTTTCTTGGTGGCAAATGGTGTAAAACCTTCAAACCAAGATTATGATAAGATATTTGGAAAGGAAAGCAATCGAAGATGTCACTCTTTTGGATCGGAAGCCATTAACGACGGACTTATACTCAATGGCCAGAATGTAAACGGAGTCCAAGGACGAAGGAAAAGGAGAAGAAGGCCAAGAATTTGCAAGAACAGGGAAGAAGCTGAAACGCAAAGGATGACTCACATTGCAGTAGAAAGAAACCGGCGTAAGCAGATGAATGAACACCTTGCTGTCTTGCGGACACTCATGCCAGAATCTTTCCTCCAAAGGGGTGATCAAGCGTCCACAGTAGGTGGTGCTATAGAATTTGTGAAGGAACTCGAACACATATTGCAGTCACTTGAAGCTCAAAAGTTTCAACTTGTTCAACGTATGGCAGAAGTTGATGATAGCAACAGTGTCTCCAAATTGATGGAACCTCCATTCTCTCAATTTTTCGTGTATCCTCAATACACTTGGTCTCAGACTCCAAACCAATACGCATCAAAGAGCAAGGCAGCTTTAGCTGACATTGAGGTCACCTTGATAGAAACTCATGCAAACCTTCGAATTCTCTCACGGAGAAGCCATAGACAGCTGTCAAAGTTGATTGCTGGTTTTCAAACTCTCTGTCTCACCATACTTCATCTCAACGTAACTACTGTTGAACCGTTGGTCCTCTTCTCGATCAGTGCAAAAGTTGAGGAAGGAAGCCAACTGACTACAGTAGATGATATAGCAACGGCAGTCCACCACCTAATCAGAATGATTGAGGAGGAAGCTGCCCTGTGCTGTAGTTGA 930 0.4301 MALDAFSSASNDLFNFIIYDTLATTPIASHHANSEYSFLVANGVKPSNQDYDKIFGKESNRRCHSFGSEAINDGLILNGQNVNGVQGRRKRRRRPRICKNREEAETQRMTHIAVERNRRKQMNEHLAVLRTLMPESFLQRGDQASTVGGAIEFVKELEHILQSLEAQKFQLVQRMAEVDDSNSVSKLMEPPFSQFFVYPQYTWSQTPNQYASKSKAALADIEVTLIETHANLRILSRRSHRQLSKLIAGFQTLCLTILHLNVTTVEPLVLFSISAKVEEGSQLTTVDDIATAVHHLIRMIEEEAALCCS* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00399 309 PANTHER MAX DIMERIZATION, MAD 84 305 - -
Pte10g00399 309 MobiDBLite consensus disorder prediction 82 105 - -
Pte10g00399 309 CDD bHLH_AtFAMA_like 109 168 - -
Pte10g00399 309 Coils Coil 154 174 - -
Pte10g00399 309 Pfam Helix-loop-helix DNA-binding domain 107 158 IPR011598 GO:0046983
Pte10g00399 309 SMART finulus 112 163 IPR011598 GO:0046983
Pte10g00399 309 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 105 176 IPR036638 GO:0046983
Pte10g00399 309 Gene3D - 103 182 IPR036638 GO:0046983
Pte10g00399 309 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 106 157 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00399 Pte-Chr10 3447461 3449655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00399 98 277 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 54.696 3.18e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte10g00399 HLH 8.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00399 - - qsa:O6P43_025148 389.037