Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00390 ATGGGGGATGCCAATGGGACAGGGAAACCTGACGAGAATCAACCAGCAGAGCAAGGTACGGTTTTCTTTCAGCTTGTTGTCAATCTATGTAACTCAACTCTTTCCTTTTTCTTTTTTTTTAAATATGGGTTCTTAGACATTAATGTTTCTGCGGTTTGTGTTTTACGTTTTCTTTCAGTGTGCAGCTTCTTTAGGAAGCCAGTTAATAGGAAGAATATAAGAAAGAGAACAGTTGGTGACGAAGATGATGGGGAGGATTCAAAGAATGAAAGTCCTTTGTTACAAGTTCAGAAAAAGAACCAAAAGACCGATAACAGATTGTACTTCTCAACTGGTCCTTCAAAGAGTTCTAGCTCTTCTGGACAAGAAAAAGGACCTCAGAAACCGATATTTACCTTTGAATCTTCGAAGCAGATACAGGTTGAGCATGACAGTAGAGCAACTGCAACTCTCGAGACAGAGACAGAATTTGATAGGGATGCTAGAGCCATCCGTGAAAGAGCACTCAAACAAGCAGATGAGAGTTTGAAGGGAAAAGGATCCGGTTCAGGGAATGAAAAGCTGTATAAAGGTATGAATAGTTACACTGATCACAAGGCCGGGTTTCGTAGGGAGCAAACCATTTCTAGTGAGAAAGCTGGTGGATCACATGGACCTCTAAGAGCTTCAGCTCATATTAGAGTTTCAGCAAGATTTGATTATCAACCTGACATTTGCAAGGATTACAAAGAGACTGGTTATTGTGGATATGGTGACTCTTGTAAGTTCATGCATGATCGAGGGGATTACAAGTCTGGGTGGCAGTTGGAAAAGGAATGGGATGAAGCAGAGAAAGAAAGGAAGAGAAGACTAGCTTCTGGACAGGATAACATAAATGATGAAGGTGGGCAAGATGACGATGAAGATGATGATTCATTGCCATTTGCCTGTTTCATTTGTAGGAACCCGTTTGTGGATCCTGTAATGACCAAGTGCAAGCATTATTTTTGTGAGCATTGTGCACTGAAGCATCATGCAAAGAACAAGAAATGTTTTGTCTGCAACACCCCTACACTTGGGATTTTCAACACAGCACACGAGATCCGCAAGAAGATGGCTGCAGAGGGAAAATGA 1113 0.4151 MGDANGTGKPDENQPAEQGTVFFQLVVNLCNSTLSFFFFFKYGFLDINVSAVCVLRFLSVCSFFRKPVNRKNIRKRTVGDEDDGEDSKNESPLLQVQKKNQKTDNRLYFSTGPSKSSSSSGQEKGPQKPIFTFESSKQIQVEHDSRATATLETETEFDRDARAIRERALKQADESLKGKGSGSGNEKLYKGMNSYTDHKAGFRREQTISSEKAGGSHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKEWDEAEKERKRRLASGQDNINDEGGQDDDEDDDSLPFACFICRNPFVDPVMTKCKHYFCEHCALKHHAKNKKCFVCNTPTLGIFNTAHEIRKKMAAEGK* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00390 370 MobiDBLite consensus disorder prediction 90 146 - -
Pte10g00390 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 308 367 IPR013083 -
Pte10g00390 370 SUPERFAMILY CCCH zinc finger 232 264 IPR036855 GO:0046872
Pte10g00390 370 FunFam RING finger protein 113A 308 367 - -
Pte10g00390 370 FunFam Zinc finger CCCH domain-containing protein 1 231 265 - -
Pte10g00390 370 Pfam Zinc finger, C3HC4 type (RING finger) 309 351 - -
Pte10g00390 370 Gene3D - 231 265 - -
Pte10g00390 370 SMART ring_2 310 347 IPR001841 -
Pte10g00390 370 SMART c3hfinal6 233 260 IPR000571 GO:0046872
Pte10g00390 370 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 234 259 IPR000571 GO:0046872
Pte10g00390 370 ProSiteProfiles Zinc finger C3H1-type profile. 233 261 IPR000571 GO:0046872
Pte10g00390 370 SUPERFAMILY RING/U-box 309 353 - -
Pte10g00390 370 PANTHER ZINC FINGER PROTEIN 183 60 368 IPR039971 -
Pte10g00390 370 ProSitePatterns Zinc finger RING-type signature. 325 334 IPR017907 -
Pte10g00390 370 CDD RING-HC_RNF113A_B 306 356 - -
Pte10g00390 370 MobiDBLite consensus disorder prediction 77 153 - -
Pte10g00390 370 MobiDBLite consensus disorder prediction 280 302 - -
Pte10g00390 370 ProSiteProfiles Zinc finger RING-type profile. 310 348 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00390 Pte-Chr10 3326114 3328908 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00390 60 368 C2H2 Transcription Factor Family AT1G01350 72.581 3.18e-163 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte10g00390 zf-C3HC4_3 1.9e-08 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00390 K13127 - gmx:100787434 504.982