Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00378 ATGGATCCAAGTGCAATGATGGATGAAGGATCGTTTCCAAATGGTGGCGGCAATGGAGGGTCGTTTAACTTGGCTGAGATCTGGCAGTTCCCAATGAATGGCGGTGGTGGTGCAGGCGTTGGTGAATCTGGATTGGGTTTGAGGAGTCCTCAGTTCGGGCACAATAATTCGGCGCAGTTCAATGGGGATTATTCTGGTCCTAGTCGGGATGTTCCGGGTAATGATCCAGTGAGTTCAGAGCAGAGAGTGAACAACCGTGGTGTTTCAGCAGCAAGGAAGAGACGCGATTCGGAGGATGAATCAATCAAGGTTGTCTCTACTAGCAGTGGTGCCAATCCTGTGAATGAATGCAATGGGAAACGGTTTAAAGCATCAGGATGTAATAATAATGAGAAGCGTGACGACAAAGCTGAAGCAGAACCCAGTTCAGGCAAGCATGTGGACCAAAATGCTCAGCCACCTCCTGAGCCTCCTAAAGATTATATTCATGTACGAGCGAGACGTGGTCAAGCAACAGATAGCCACAGTTTGGCAGAGAGAGCTAGGAGAGAAAAGATAAGTGAGAGGATGAAAGTTCTTCAGGATTTGGTCCCTGGTTGTAATAAGGTTATTGGAAAAGCACTTGTCCTGGATGAGATAATTAATTACATCCAATCATTACAACGCCAAGTTGAGTTCCTATCAATGAAGCTTGAAGCTGTGAACACAAGAGTACACCCTGGTATTCAAGAGTTTCCTGCTAAAGATTTTGGTCAACAACCTTTTGACACTGCCAGCATGGCATTTGCTTCGCAAGCAACGAGAGACTACAAGCGTGTTTCATCACCAGAGTGGTTGCACATGCAGATAGGTGGTGGTTTCGAAAGAACATCATAA 876 0.46 MDPSAMMDEGSFPNGGGNGGSFNLAEIWQFPMNGGGGAGVGESGLGLRSPQFGHNNSAQFNGDYSGPSRDVPGNDPVSSEQRVNNRGVSAARKRRDSEDESIKVVSTSSGANPVNECNGKRFKASGCNNNEKRDDKAEAEPSSGKHVDQNAQPPPEPPKDYIHVRARRGQATDSHSLAERARREKISERMKVLQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRVHPGIQEFPAKDFGQQPFDTASMAFASQATRDYKRVSSPEWLHMQIGGGFERTS* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00378 291 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 239 IPR036638 GO:0046983
Pte10g00378 291 MobiDBLite consensus disorder prediction 87 102 - -
Pte10g00378 291 Gene3D - 167 241 IPR036638 GO:0046983
Pte10g00378 291 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 170 220 IPR011598 GO:0046983
Pte10g00378 291 MobiDBLite consensus disorder prediction 126 143 - -
Pte10g00378 291 CDD bHLH_AtBPE_like 160 242 - -
Pte10g00378 291 SMART finulus 176 226 IPR011598 GO:0046983
Pte10g00378 291 MobiDBLite consensus disorder prediction 49 64 - -
Pte10g00378 291 MobiDBLite consensus disorder prediction 1 159 - -
Pte10g00378 291 Pfam Helix-loop-helix DNA-binding domain 174 221 IPR011598 GO:0046983
Pte10g00378 291 FunFam Basic helix-loop-helix transcription factor 167 239 - -
Pte10g00378 291 Coils Coil 217 237 - -
Pte10g00378 291 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 76 260 IPR024097 GO:0006355
Pte10g00378 291 MobiDBLite consensus disorder prediction 72 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00378 Pte-Chr10 3202748 3206544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00378 1 249 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 57.028 4.22e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte10g00378 HLH 3.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00378 - - qsa:O6P43_025379 391.349