Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00367 ATGGCGGGTGGCAAGGTGTATGGAAGTTCAAACATGACAGTTTTACTTCAAAATAAAAGGCTTCCTTGTTCTCCTGACGTCTTTTATTCTGTTTGGGTTCCAAGCTCTGATCCATCCCTTCAAGGGTCAACTTCGTCGGTTAACTTTGATGTCGGCAATGCAAGGGATACAACAGATGAGAGACACTTCCTCCGACCACTTGATAAAGAAGAAGAGGGCGGTGGTGATGACTGTGACATGTTTTTTCACCAAGCTGGAAAGAAAAGGCGCCTCACTACTGATCAAGTTCGTTTTCTGGAGAAGAGCTTTGAGGTAGAAAATAAGCTTGAACCTGAAAGAAAAATCCAACTGGCAAATGAGCTTGGTTTGCTGCCCAGACAAGTTGCCATATGGTTTCAGAACCGGCGGGCTCGTTTCAAGACCAAACAGCTGGAGAAAGACTATTGTTCTCTAAAGGCCTGTTATGAAAAGCTTAAGCTTGATTATGACAATCTTCTGAAAGAGAATGACAACTTGAAAAATGAGGTTAATTCCCTGAAGAGTAGATTGCTTAATGAAGAGAAAGGGAAGAAAAATGATAAGGGGTCAGCTGATGATACTGTTAATAAATCTGACACAGAAACTGTGAAGCCAATTTCAAATATTGTTGCTTGTGAGAATGGGATGGGTGTGGTTACAATGGCATGCAAACAAGAAGATGTCAATTCAGTAAAAAGTGATGTGTTTGATTCAGACAGCCCACATTACACAGATTGTAACCATTCAACGTTTTTAGAGCCTGCAGATTCCTCACATGCTTTTGGACCAGAGCATTCAGACTTCTCACAAGATGAAGAAGACAACCTTAGCAAAAGTCTATTACCTTTCCAATTCTTGCCAAAAGCTGAAGATGCTTGTTATGATGATCCAACAGACAACTCCTGTCACTTTGGCTTTCCCGTTGAGGATCAAACCTTTTGTTTTTGGCCTTAA 972 0.4115 MAGGKVYGSSNMTVLLQNKRLPCSPDVFYSVWVPSSDPSLQGSTSSVNFDVGNARDTTDERHFLRPLDKEEEGGGDDCDMFFHQAGKKRRLTTDQVRFLEKSFEVENKLEPERKIQLANELGLLPRQVAIWFQNRRARFKTKQLEKDYCSLKACYEKLKLDYDNLLKENDNLKNEVNSLKSRLLNEEKGKKNDKGSADDTVNKSDTETVKPISNIVACENGMGVVTMACKQEDVNSVKSDVFDSDSPHYTDCNHSTFLEPADSSHAFGPEHSDFSQDEEDNLSKSLLPFQFLPKAEDACYDDPTDNSCHFGFPVEDQTFCFWP* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00367 323 SUPERFAMILY Homeodomain-like 77 144 IPR009057 -
Pte10g00367 323 MobiDBLite consensus disorder prediction 183 205 - -
Pte10g00367 323 ProSiteProfiles 'Homeobox' domain profile. 82 142 IPR001356 GO:0003677
Pte10g00367 323 SMART HOX_1 85 146 IPR001356 GO:0003677
Pte10g00367 323 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 76 220 IPR045224 GO:0003700
Pte10g00367 323 Coils Coil 155 189 - -
Pte10g00367 323 CDD homeodomain 87 143 IPR001356 GO:0003677
Pte10g00367 323 ProSitePatterns 'Homeobox' domain signature. 117 140 IPR017970 GO:0000981|GO:0006355
Pte10g00367 323 PRINTS Lambda-repressor HTH signature 113 122 IPR000047 GO:0003677
Pte10g00367 323 PRINTS Lambda-repressor HTH signature 122 138 IPR000047 GO:0003677
Pte10g00367 323 Gene3D - 82 148 - -
Pte10g00367 323 FunFam homeobox-leucine zipper protein ATHB-6-like 90 136 - -
Pte10g00367 323 MobiDBLite consensus disorder prediction 183 206 - -
Pte10g00367 323 Pfam Homeobox associated leucine zipper 142 183 IPR003106 GO:0006355|GO:0043565
Pte10g00367 323 Pfam Homeodomain 87 140 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00367 Pte-Chr10 3110487 3112372 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00367 87 257 Homeobox Transcription Factor Family AT3G01470 48.851 8.37e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pte10g00367 Homeodomain 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00367 - K09338 qsa:O6P43_025407 396.741