Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00352 ATGTCCTCCATCCCAAAGCTAGTATTCATATGGCAAAGGTTTATATTACGAAGTTTGATTGTCCGTGTTTTTGCTTTGATTACAGAGCAGAGAAGAGCCAAGGAAGGGACTGGAAAGTTAGAATCCGAGGTCCTTGGTTTGGATCGTAATAAGCTTTTGTCTGGAAGAGCTTTTGGGTCACAGAAGTTGGGTTTGACATGCAAGTTGGTTTTGATAAAAGGAAGGAGCGTCCAAGGGAGAGCGTCTGTTACCAATAAAATATACACCTGGAAACAAAAAAAGAATATGCAGGGAAGGAAGAAGACCAAGCAGCAGCAGCAATGTCATATAGATTCCAAGAAGAAGGAGCGTCATATTGTTACATGGTCTCAAGAGGAGGATGATATTCTGAGAGAACAGATAAGCATCCATGGCACTGAAAACTGGGCGATTATTGCTTCTAAATTCAAGGACAAGACGACGAGACAGTGTAGAAGAAGGTGGTACACATACTTAAATTCTGATTTCAAGAAAGGGGGATGGTCGCCTGAAGAAGACTTGCTCTTATGTGAGGCGCAAAAGATATTCGGCAATAGATGGACGGAGATAGCGAAGGTTGTGTCAGGCAGGACGGATAATGCTGTGAAGAATCGATTCTCCACTTTGTGCAAAAAGAGGGCAAAATATGAAGCATTGGCAAAAGAAAATTCGTCTTCTTACATAAACTCAAATAACAAAAGGGTCAACTTCCAAAGTGATTTTGGTTCAGACGGAATCTCATCGGTGGAATCACCCAAAAAGCGATTGAGGAGGACACATGTTTCTGGAATCACAGACAAAGTTAACTTCACAGAGAGAGCACATAAGCAATGTGAAGCCACGATCCATCAGCAGTCCAGAGCACCTTTCTCAGTATTAGCTCATAATGTCCATAATCTCAACAATTTGGCTGTTCAGCAGAATCATGTCAACGGAACCAAGGTCATCAATGGAGTTCAGCATAACAAGATTCAAGCAACATTTCTCAAAAAGGATGATCCGAAGATCAGTGCTTTGATGCAACAAGCAGAACTACTTACTTCACTTGCTCAAAAAGTCAACACAGAAAATACAGACCAGAGTCTTGAAAATGCTTGGAAGGTTCTTCAAGAGTTTTTGAACCAGAGCAAAGAAACAGATGCCACCAAATGCAAGATCGCGGAGATACATCTCGATGATCTTAAAGAAATCATTGAAGATTTAAGGAGCAGTAATGATGGAAGCACATTTTCTTGGAGACAACCTGATCTATACGAGGACTCGCCAGGAAGTTCAGAATACAGCACAGGATCAACTGTCCTGCCCCAATCTGTCGGTGATCAATTACAATATTCGCTGCACCGATATACTGAAACTGATATAAAAACTCCTGATATTGGAGAGCAGAAGAGACCTGAAGAAGGCGAGAAGGGGGATCTTACTGGTGAGAACACACATTCAGCAGAGGGCATTTTCTCTTCTTTTGACAAGTTAGACATTGAAGCAGCCCTATCTACTACATTAAGTGCTAACTTCGGTTCCCCTCTACAAGTAGCCCCTCTTTTCAGGTCCTTGGCAGCAGGAATTCCAAGCCCAATATTTTCAGAAAGTTTGTGA 1614 0.4188 MSSIPKLVFIWQRFILRSLIVRVFALITEQRRAKEGTGKLESEVLGLDRNKLLSGRAFGSQKLGLTCKLVLIKGRSVQGRASVTNKIYTWKQKKNMQGRKKTKQQQQCHIDSKKKERHIVTWSQEEDDILREQISIHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDLLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENSSSYINSNNKRVNFQSDFGSDGISSVESPKKRLRRTHVSGITDKVNFTERAHKQCEATIHQQSRAPFSVLAHNVHNLNNLAVQQNHVNGTKVINGVQHNKIQATFLKKDDPKISALMQQAELLTSLAQKVNTENTDQSLENAWKVLQEFLNQSKETDATKCKIAEIHLDDLKEIIEDLRSSNDGSTFSWRQPDLYEDSPGSSEYSTGSTVLPQSVGDQLQYSLHRYTETDIKTPDIGEQKRPEEGEKGDLTGENTHSAEGIFSSFDKLDIEAALSTTLSANFGSPLQVAPLFRSLAAGIPSPIFSESL* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00352 537 ProSiteProfiles Myb-like domain profile. 166 216 IPR001005 -
Pte10g00352 537 MobiDBLite consensus disorder prediction 456 485 - -
Pte10g00352 537 Gene3D - 110 170 - -
Pte10g00352 537 MobiDBLite consensus disorder prediction 457 482 - -
Pte10g00352 537 Coils Coil 390 410 - -
Pte10g00352 537 SUPERFAMILY Homeodomain-like 118 212 IPR009057 -
Pte10g00352 537 ProSiteProfiles Myb-like domain profile. 122 165 IPR001005 -
Pte10g00352 537 FunFam Transcription factor MYB124 114 170 - -
Pte10g00352 537 CDD SANT 121 165 IPR001005 -
Pte10g00352 537 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 165 IPR017930 -
Pte10g00352 537 Pfam Myb-like DNA-binding domain 122 181 - -
Pte10g00352 537 MobiDBLite consensus disorder prediction 415 440 - -
Pte10g00352 537 CDD SANT 174 215 IPR001005 -
Pte10g00352 537 Gene3D - 173 245 - -
Pte10g00352 537 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 166 220 IPR017930 -
Pte10g00352 537 PANTHER MYB PROTEIN-RELATED 121 267 - -
Pte10g00352 537 SMART sant 118 167 IPR001005 -
Pte10g00352 537 SMART sant 170 218 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00352 Pte-Chr10 2985509 2989410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00352 111 419 MYB Transcription Factor Family AT2G02820 62.939 3.16e-135 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte10g00352 Myb_DNA-bind_6 4.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00352 K09422 - qsa:O6P43_033044 565.074