Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00348 ATGTCTAGCAGAAGATCCCGCTCTAGACAGTCTGGTGCTTCCAGTGATATTACTGAAGCACAGATCAACGATCTCGTCTCCAAGTTACAACAACTTATTCCTGAGCTTCGTCGAAGAAGGTCCGACAAGGTTTCTGCTTCCAAGGTTTTGCAGGAGACTTGCAACTACATCAAAAACTTGCACAGAGAAGTTGACGACCTAAGTGACCGATTATCGGAGCTTCTTTCGGCTACAGACTCCAACAGCGCTCAAGCAGCCATTATTAGGAGCTTACTTATGTAG 282 0.4574 MSSRRSRSRQSGASSDITEAQINDLVSKLQQLIPELRRRRSDKVSASKVLQETCNYIKNLHREVDDLSDRLSELLSATDSNSAQAAIIRSLLM* 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00348 93 CDD bHLH_AtPRE_like 17 76 - -
Pte10g00348 93 Pfam Helix-loop-helix DNA-binding domain 21 60 IPR011598 GO:0046983
Pte10g00348 93 Gene3D - 4 90 IPR036638 GO:0046983
Pte10g00348 93 FunFam Transcription factor ILI6 7 89 - -
Pte10g00348 93 Coils Coil 57 77 - -
Pte10g00348 93 PANTHER TRANSCRIPTION FACTOR PRE 1 93 IPR044293 GO:0006355|GO:0040008|GO:0046983
Pte10g00348 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 81 IPR036638 GO:0046983
Pte10g00348 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00348 Pte-Chr10 2922310 2923666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00348 1 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 71.277 5.38e-37 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte10g00348 HLH 9.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00348 - - gmx:100804830 147.132