Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00327 ATGGGTGATCATTTGGTGGTTGATGTCGACCGTCTTGCACGGCCGGTGACCACTCAATCGTCGGTCGTAACAACTGAGGTGGGTCCATCGCAAGATAATAGCGATTCTGGCGTGTCAGTCGATATGGCTTGTCCGTCGCTTTCGAGGCCGACACTGCCGCCTCCTCCTCCAGCTTCATCATCCCATAATAATGACGAGGCAAGGGTGGAGGTTGATGAGGATTGTAATGACGATGAGCCATTGATTCAAATAGCTGAATGTCGAATTTGTCAAGACGAAGACTGCATTAAGAACTTGGAGACACCTTGTGCGTGCAGTGGAAGTCTCAAGTATGCTCATAGAAAGTGTGTTCAGCATTGGTGCAATGAGAAAGGCGACATAATTTGCGAGATCTGTCACCAGCCATACCAACCTGGTTACACTGCTCCGCCACCACGCCTTCACCCTGAAGAAACTACCATTGACATGGGTGGAGGCTGGACTATATCGGGAACACCTTTAGATTTGAATGATCCACGGCTCTTGGCAATTGCAGAGGCAGAGCGTCAGTTCCTAGAAGCTGAATATGATGAGTATGCTGCTTCAAATGCCAGTGGGGCTGCATTTTGCCGCTCAGCTGCTTTAATTTTGATGGCTCTTTTGCTCTTGAGACATGCATTATCTGTCACGGACTCTGATGATGATGATCCATCAGCTTTCTTTTCTCTCTTTTTGCTTAGAGCGGCTGGGTTTCTTTTGCCTTGCTACATCATGGCCTGGGCAATCAGTATTTTGCAACGAAGGCGGCAAAGACAAGAGTCTGCAGCATTGGCCGCAACCCAAGTTGCTTTTGTTTTACAATCTGGGCAACATAGAGGCCTGCAATTTGCAATAGGATCAGGACCTGCAGGAAACCAACAACATGAAGAAGTCTAG 915 0.4809 MGDHLVVDVDRLARPVTTQSSVVTTEVGPSQDNSDSGVSVDMACPSLSRPTLPPPPPASSSHNNDEARVEVDEDCNDDEPLIQIAECRICQDEDCIKNLETPCACSGSLKYAHRKCVQHWCNEKGDIICEICHQPYQPGYTAPPPRLHPEETTIDMGGGWTISGTPLDLNDPRLLAIAEAERQFLEAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVTDSDDDDPSAFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQESAALAATQVAFVLQSGQHRGLQFAIGSGPAGNQQHEEV* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00327 304 MobiDBLite consensus disorder prediction 17 74 - -
Pte10g00327 304 Pfam RING-variant domain 87 132 IPR011016 GO:0008270
Pte10g00327 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 142 IPR013083 -
Pte10g00327 304 FunFam RING/FYVE/PHD zinc finger protein 75 143 - -
Pte10g00327 304 SMART ringv_2 86 133 IPR011016 GO:0008270
Pte10g00327 304 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 265 IPR033275 -
Pte10g00327 304 Coils Coil 175 195 - -
Pte10g00327 304 CDD RING_CH-C4HC3_MARCH 87 133 - -
Pte10g00327 304 ProSiteProfiles Zinc finger RING-CH-type profile. 79 139 IPR011016 GO:0008270
Pte10g00327 304 MobiDBLite consensus disorder prediction 17 41 - -
Pte10g00327 304 SUPERFAMILY RING/U-box 86 137 - -
Pte10g00327 304 Pfam Protein of unknown function (DUF3675) 138 255 IPR022143 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00327 Pte-Chr10 2732877 2735435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00327 69 175 C3H Transcription Factor Family AT5G05830 27.350 3.41e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00327 - - qsa:O6P43_025464 414.075