Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00323 ATGGCTTCTGAACCTGAAGTTTCTGAAATATCTACTCTGTTTGAAGCGATGATCAGGAACACAGACCTGTCTCTGTTTCTACCTTTCATATTGGGATTCACAAATTCGAGATATTTTCGTAGAGCGTCGCTAAACGCAGATCATGAAAGTGAGAACGTTGCATTACCTACAGATACAAACCCCACAACAACCGCACCTGATAGGATCGTATTGATAAACCCAATTACTCAAGGCATGATTGTGATTGATGGTACTGCAAATTTAGAGACACTGCTTGGTGAATTGGGTCTTAAGGAAGGCCAGCCGCCAGCTTCTAAGGAGTCTATTGACTCCTTGCCATGTTGTGATATTTGTGAAGATGAAGATGGGGAATGCGTTATCTGTTTGGACGAGTGGTTGGTTGGTGGGGTGGTGAAAGAGATGCCTTGCACGCATAAGTTCCATGGAAAGTGTATAGAGAATTGGTTGAGGATTCATGGGTCTTGCCCTATTTGCAGGTATAACATGCCTGAAGATGAGAAAAATACGGGAAAGAAGACTGATGGTGAAAGAGGAGAAAGGAGGGAACTTTGGGTCAGTTTTTCTATTCGTGATGATAGAAGTAGGGATTCAAACCAAGCTCAAGCTCAATCTCCTCCTGCTGATTCGAGTGATCATATGTCAGATTCCCGAGCTGGTGGTGAGATTCAATGA 693 0.4329 MASEPEVSEISTLFEAMIRNTDLSLFLPFILGFTNSRYFRRASLNADHESENVALPTDTNPTTTAPDRIVLINPITQGMIVIDGTANLETLLGELGLKEGQPPASKESIDSLPCCDICEDEDGECVICLDEWLVGGVVKEMPCTHKFHGKCIENWLRIHGSCPICRYNMPEDEKNTGKKTDGERGERRELWVSFSIRDDRSRDSNQAQAQSPPADSSDHMSDSRAGGEIQ* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00323 230 MobiDBLite consensus disorder prediction 194 230 - -
Pte10g00323 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 52 170 - -
Pte10g00323 230 FunFam E3 ubiquitin-protein ligase RNF181 94 172 - -
Pte10g00323 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 172 IPR013083 -
Pte10g00323 230 SUPERFAMILY RING/U-box 115 172 - -
Pte10g00323 230 Pfam Ring finger domain 124 166 IPR001841 -
Pte10g00323 230 ProSiteProfiles Zinc finger RING-type profile. 125 166 IPR001841 -
Pte10g00323 230 SMART ring_2 125 165 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00323 Pte-Chr10 2710450 2712897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00323 1 208 C3H Transcription Factor Family AT1G26800 46.512 1.47e-56 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00323 - - qsa:O6P43_033006 234.187