Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00322 ATGTCGGAGAATAAAGACTTGGCGATAAAGCTTTTCGGGAAGACGATACCTTTATCACTTCTGGACGAGGCTTCGACCCGTGAATCTTTAGCTGGAAAACCTGATGATGGACATTCTTCTCAGCAAAATTATCGTTCTTCAGGTCCTTCCCCGCCTGGGAAGACCTCTGCAACTGAACAAGGAGGACAGAGAGAAGAAGATGAGGAATTTTCAGGGAAGGTAATCAGCACGCAAACACAAGAAGATGATGTCGTACACCAAGCAATAAAGGATAAACAGACACCTGCCACAACAGCTTCTGATGCTAACGAGAACCCAGAAATACATTCGAGTTATATAGGTAAGTCATCACTGGACGCCAAGTCTGCAGAGCAGAGTGAGACAGGCACATCTGATGAAAAACAATTGAAGAAACCTGACAAGATACTTGCATGTCCTCGATGCAATAGCATGGATACTAAATTCTGTTACTTCAACAATTATAATGTAAACCAGCCCCGTCATTTCTGTAAGAAATGCCAGAGATACTGGACTGCTGGGGGGACAATGAGAAATGTTCCAGTTGGTTCTGGACGCCGCAAAAACAAAAATGCTTCAGCTTCGCATTACCGTCACTTGATGGTTCCTCAAATTTCTCCTACAGCTCAGCTTGACGTTAATGGAGTTCATAATGGTCTTCTAACTTTTGGCTCAGATACTCCTCTATGTGATTCCTTGCCTTCCGCTTTGAACCTTGCAGATAAAATGAATAATGTCGCTCAAAATGATATTCATCAACTGGAACAAAAAGCCTTTGTTTCTAGTGGAGGAGAAGATAATGGAGAAGATCACTCAAGTGGAACTTCTGTCACAGCTTCAGGTTCAACTGAAAGGAGAGGCCATTGTGGCTTTCAAGAATCAGTTGGTAATAGCTATCAAGCTTTTCCTGCTCAAGTACCATGCATACCTGGATCTCCTTGGCCATATGCAATGAAATCAACACAATGGAGTCCAGTGTTGCCTTCTGAATCATTTCAACCTGCTATTCCTGTATCTTTCTACCCTGCACCTGCATATTGGGGTTGTACTCTTCCGAGCCCGTGGAATGTTCCATGTGTCCCTCCATCATCTTCTTCTGTTAACCAACGTGCCTCTGGTCCTGGTCCTAATTCACCAACACTGGGAAAACATTCGAGGGATGGAGACGTACTTAGTACATCCAACTTAAAGAAAGAAGAGCCTACCAAAGTTGGGGGCAATGCAGAGACTTCTGTCTTGGTTCCCAAGTCATTGAGGATTGATGATCCAACTGAAGCTGCAAAGAGTTCAATATGGGAAGCACTGGGAATTAAGGATGAAAAGGTTAATTCTACCCAGGTCAGATCACTTTTCAAGGGATTTCAGACCGAGGGCAAGGACAAGAATCACGTGGTTGAGCCCTCTACTTTGCTGCAAGTGAACCCTGCAGCCTTTTCCAGGTCTCTTAGTTTCCATGAGAGCACCTGA 1485 0.4411 MSENKDLAIKLFGKTIPLSLLDEASTRESLAGKPDDGHSSQQNYRSSGPSPPGKTSATEQGGQREEDEEFSGKVISTQTQEDDVVHQAIKDKQTPATTASDANENPEIHSSYIGKSSLDAKSAEQSETGTSDEKQLKKPDKILACPRCNSMDTKFCYFNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGSGRRKNKNASASHYRHLMVPQISPTAQLDVNGVHNGLLTFGSDTPLCDSLPSALNLADKMNNVAQNDIHQLEQKAFVSSGGEDNGEDHSSGTSVTASGSTERRGHCGFQESVGNSYQAFPAQVPCIPGSPWPYAMKSTQWSPVLPSESFQPAIPVSFYPAPAYWGCTLPSPWNVPCVPPSSSSVNQRASGPGPNSPTLGKHSRDGDVLSTSNLKKEEPTKVGGNAETSVLVPKSLRIDDPTEAAKSSIWEALGIKDEKVNSTQVRSLFKGFQTEGKDKNHVVEPSTLLQVNPAAFSRSLSFHEST* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00322 494 PANTHER CYCLIC DOF FACTOR 2 1 494 IPR045174 GO:0003700|GO:0006355
Pte10g00322 494 ProSiteProfiles Zinc finger Dof-type profile. 143 197 IPR003851 GO:0003677|GO:0006355
Pte10g00322 494 MobiDBLite consensus disorder prediction 367 415 - -
Pte10g00322 494 MobiDBLite consensus disorder prediction 266 295 - -
Pte10g00322 494 MobiDBLite consensus disorder prediction 272 295 - -
Pte10g00322 494 MobiDBLite consensus disorder prediction 27 136 - -
Pte10g00322 494 MobiDBLite consensus disorder prediction 91 125 - -
Pte10g00322 494 MobiDBLite consensus disorder prediction 35 59 - -
Pte10g00322 494 ProSitePatterns Zinc finger Dof-type signature. 145 181 IPR003851 GO:0003677|GO:0006355
Pte10g00322 494 MobiDBLite consensus disorder prediction 367 385 - -
Pte10g00322 494 Pfam Dof domain, zinc finger 141 197 IPR003851 GO:0003677|GO:0006355
Pte10g00322 494 Coils Coil 243 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00322 Pte-Chr10 2703728 2707060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00322 6 495 C2C2-Dof Transcription Factor Family AT5G39660 38.476 1.97e-90 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pte10g00322 zf-Dof 9.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00322 - - qsu:112006803 498.819