Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00320 ATGGGCAGGGTAAAGCTCAAAATAAAGAAGTTAGAGAACACAAATGGTCGTCAGGCAACTTACGCCAAAAGGAAGCATGGAATTATGAAGAAGGCGAGTGAGTTATCTATTCTGTGTGATATAGATATCGTCCTTCTCATGTTCTCACCAACTGGCAAACCTTCATTATGTAGAGGATTGCGCAGCGAGATTGCAGAAGTGATTGGAAAGTTTTCCGAACTAACTCCACAGGAAAGGACAAAGAGGTACATTTCTCTACAATTATGCACGGCACTCAAAAAGACGTTCAGAAAGGTAGACCACGATGTAAATATACCAGAACTGTTGGGTACAAGGTATGCCACACTTCAATCCAAATTGCAAATTTCGCACATGTTAAATATTTGGTATTTTGTATTCTGCAGCTACTGGACTGAACCTGCCAAGATCAATAACATACAACATTTGGAGCAAATGGAGACTTCATTACGTGGTTCACTTAATCAAATCCGACTACGTAAGAAAAACATTCAGAAGCAGCAACTTATGTCTTTTGAATACAGTAATCAGTTCAATGAGATGCATATACCCTTCAGAGTGAGTTCTGAACAACAGCTTCAACCTTTCTCATGGATTTACAACACTGATAACCAGCATGCTATCTTACCTGAAGACACAAAATTGCTGGTCAATAGGGATGCGGAGTTTTCTTCAAGCTCGTCCTATGAGAGTCACACCAGTTATATTGGCACTGGAAAAAGTCCAGAGATATCACCTACAGCACATGATCAAGCTCTTCATGAATTACACCGAACTGCTCCTCTGAGGTTTCAACTAGAAGGGCAATTACCCTACCTGCCTTGCAGTGTTGAATTATTGAATGACTATATGAATCCACAGGAAAACATTTTGAATCATTATTTTACTGATAGTTTTGAAGCCCCTAGATCTGTATATGATAGTAGCCACCCTGGCTTGGCCTCCACGTCAGGCCATTGTACTCTTACTACGCCTGATGAGCATTTATATGCCCAGGCAAGCTTTCTTTAA 1029 0.4043 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKASELSILCDIDIVLLMFSPTGKPSLCRGLRSEIAEVIGKFSELTPQERTKRYISLQLCTALKKTFRKVDHDVNIPELLGTRYATLQSKLQISHMLNIWYFVFCSYWTEPAKINNIQHLEQMETSLRGSLNQIRLRKKNIQKQQLMSFEYSNQFNEMHIPFRVSSEQQLQPFSWIYNTDNQHAILPEDTKLLVNRDAEFSSSSSYESHTSYIGTGKSPEISPTAHDQALHELHRTAPLRFQLEGQLPYLPCSVELLNDYMNPQENILNHYFTDSFEAPRSVYDSSHPGLASTSGHCTLTTPDEHLYAQASFL* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00320 342 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Pte10g00320 342 CDD MADS 2 54 - -
Pte10g00320 342 Gene3D - 14 94 IPR036879 GO:0003677|GO:0046983
Pte10g00320 342 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte10g00320 342 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte10g00320 342 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte10g00320 342 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Pte10g00320 342 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 197 - -
Pte10g00320 342 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677|GO:0046983
Pte10g00320 342 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00320 Pte-Chr10 2682951 2685797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00320 1 263 Type I MADS-box Gene Family AT2G03060 51.282 9.34e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pte10g00320 SRF-TF 1.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00320 - - qsa:O6P43_025480 374.785