Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00293 ATGGTGATCAAGAAAAAGGTACAGCAACAGGAGAATAGTTCCGATGGGAACTTGGGACTGCACCAGCTAATGGAAGAGGTTGTTGCAGTACGTGATAGAGAAACAAGAGCGAGGAAGAAATACATTATATTGGGATGGGTGGTTGAGATAAAGGATACAATACAGAATATTAGAGTTTGGCTTGGCACTTATGACACTGCTGAAGAAGCTGCCCGAGCTTATGATGAAGCGGCATGTATTCTTCATGGAACTAACACTCGCACCAACTTCTCGCGCAGTGTTTCTTCTAATTCAAAGCCAGCTTTACCTTCAAAGATTTGTAGTCTTCTACTCCTAAGACTCAAAGCAAGAAAAGAAAGCTCTAAGTCTGATATTCCTTCTTTGAACAGTACTAATCTTCATGAGCAAGAGATAGTAGAAGATCTCTTGTTTGATACTAGTAATTATCCAAATGTGCATTTAGATGGTATCTGTCTTCTTGAGACTAATGATGCAGCTAGCACTAATATTGGTTCAATGAACTGCATAAGTTCAAGTGTTAGCATTGAATTGAGTTTTACTAATCATTTGATATCTTCCAGTATTGAAAATATGATGGACTATAATTGGTCTGCTATTACCGATGAGAATAGTCAAAGTGGTAATATGCAATTGGAAGAGAAAGAAGAAATAGGAGAATGTGACATGGGATTCGTTGTACAGGAAATGGTGATAATGGACGAGGAGATCAGTAGTGATGAGATATCAATAGTGGATGAAACTGTTAGGATGAGAAAGTATGAACGCACATTCTCAGCTTCTCTATATGCCCTTGATGGCATTTTAGAGCGTCTCAGGTTTGAACTTGGCTCAACACATTCAGATGGATTCGAGAATTGTGAATTACAAGCGATCACATCCAATGCTATAAATAACCATGTAACCGATGAGGAGTATGACAGAAAAGAAGCTGAGAACCATTGTAAATAG 969 0.3839 MVIKKKVQQQENSSDGNLGLHQLMEEVVAVRDRETRARKKYIILGWVVEIKDTIQNIRVWLGTYDTAEEAARAYDEAACILHGTNTRTNFSRSVSSNSKPALPSKICSLLLLRLKARKESSKSDIPSLNSTNLHEQEIVEDLLFDTSNYPNVHLDGICLLETNDAASTNIGSMNCISSSVSIELSFTNHLISSSIENMMDYNWSAITDENSQSGNMQLEEKEEIGECDMGFVVQEMVIMDEEISSDEISIVDETVRMRKYERTFSASLYALDGILERLRFELGSTHSDGFENCELQAITSNAINNHVTDEEYDRKEAENHCK* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00293 322 ProSiteProfiles AP2/ERF domain profile. 31 91 IPR001471 GO:0003700|GO:0006355
Pte10g00293 322 SMART rav1_2 45 97 IPR001471 GO:0003700|GO:0006355
Pte10g00293 322 Gene3D AP2/ERF domain 29 92 IPR036955 GO:0003700|GO:0006355
Pte10g00293 322 Pfam AP2 domain 46 81 IPR001471 GO:0003700|GO:0006355
Pte10g00293 322 CDD AP2 46 90 IPR001471 GO:0003700|GO:0006355
Pte10g00293 322 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 45 188 - -
Pte10g00293 322 SUPERFAMILY DNA-binding domain 46 93 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00293 Pte-Chr10 2467632 2468687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00293 26 110 AP2-EREBP Transcription Factor Family AT5G19790 55.294 3.53e-22 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte10g00293 AP2 8.3e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00293 K09286 - csin:114269996 185.267