Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00279 ATGGCAGGTGACAGTGCAGTGGCAGAAACCAACGAACCTACCGGTGATGACAGAGTCACTGTCAATATTCGATGTTCTAACGGATCAAAGTTTTCTGTTCAGTTTAGCCTCGATTCAACTGTTAGATCTTTCAAAGACGTCGTAGCTCGGAACTGCGATATCCCAGCTGATCATCAACGTCTGATTTACAAGGGTCGGATCTTGAAAGACGATCACACCCTACAAAGCTACGGTTTGGAGGCAGATCACACTGTACATTTGGTTCGTGGTTTTGCTGCTTCTGCTCCATCAGTCAACTCAACTGCAGGAGCCAATCCTGGAGGTACAGCTACAACTCCTAACAGTGCTGGAAGTACTGGATCTAATGAAGGTGTGGGGTTAGGAGGCCCCAATCTTGGAGCGTCACTATTTCCTGGGCTTGGATTAAGTGGTATTAGCAGTGGTAATAGTTTATTTGGATCTGGGCTGCTGGATTTTGAGCAAATGCAGCAACAGTTGAGTCAGAACCCCAACATAATGAGGGAAATAATGAATATGCCTGCGATTCAAAATCTCATGAATAATCCTGAAGTAATGCAAAATTTGATTATGAATAATCCTCAGATGCGGGAAATTATTGATCGGAACCCTGAGCTGGCTCATGTACTTAATGATCCTAGTACCCTCCGCCAGACACTAGAAGCTGCTAGAAACCCTGAGCTCATGCGTGAGATGATGCGCAATACTGATAGAGCTATGAGCAATATTGAATCTTCTCCTGAAGGATTCAACATGCTGAGGCGTATGTATGAGAATGTTCAAGAGCCATTCCTAAATGCTACAACCCTGACTAATACTGGAAATGGAAACTCTAATCCTTTCGCTGCTCTTTTGGGAAACCAAGGTGGCCAGACCAGAGATCAATCAACAAATCCAACAACCACTGGTTCAGAAGCAAATTCTGGTTCTCCTGCTCCCAATACCAATCCACTTCCAAATCCCTGGAGCTCTACAGGCTCAACTGGAGGTGCCCAATCCAACAGGTCAACATCTTCAGGGGATACTAGGCAACAAGCAACCAGTGGTTTAGGGCTTCGTCTTCCTGATCCTGAGGGCATGATGGGTGCCATGCAAGATCCTACACTGCTCACTCAGGTAATGCAAAATCCAGCATTTTCACAAATGATGCAAAGCCTCCTTTCAAATCCCCAATACACGAGCCAGCTTAGCAGCATGCTTGATTCAAACTCTCCATTGCGAGAAATGATGCAAAACCCAGAAGTCATTCGTCAATTAACATCTCCTGAGGCAATGCAGGTAGAGAGATCTAATATGGTGCATTCTTTATATTTTCTCTCTTCCTTTGCGTGCTTTACATTTTTTTTCCCAATTTTTTTTAGGAATCTTATATGCTATCTTATCGGTATGCTAATATATATACTTTTCAATATTGAGATCCTATACTGCAAGAATTTTATCATGGTAGTGGGTAATAAATGA 1479 0.4327 MAGDSAVAETNEPTGDDRVTVNIRCSNGSKFSVQFSLDSTVRSFKDVVARNCDIPADHQRLIYKGRILKDDHTLQSYGLEADHTVHLVRGFAASAPSVNSTAGANPGGTATTPNSAGSTGSNEGVGLGGPNLGASLFPGLGLSGISSGNSLFGSGLLDFEQMQQQLSQNPNIMREIMNMPAIQNLMNNPEVMQNLIMNNPQMREIIDRNPELAHVLNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTLTNTGNGNSNPFAALLGNQGGQTRDQSTNPTTTGSEANSGSPAPNTNPLPNPWSSTGSTGGAQSNRSTSSGDTRQQATSGLGLRLPDPEGMMGAMQDPTLLTQVMQNPAFSQMMQSLLSNPQYTSQLSSMLDSNSPLREMMQNPEVIRQLTSPEAMQVERSNMVHSLYFLSSFACFTFFFPIFFRNLICYLIGMLIYILFNIEILYCKNFIMVVGNK* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00279 492 MobiDBLite consensus disorder prediction 274 369 - -
Pte10g00279 492 Gene3D - 194 252 - -
Pte10g00279 492 SMART CBM 403 434 IPR006636 -
Pte10g00279 492 SMART CBM 363 402 IPR006636 -
Pte10g00279 492 SMART CBM 199 238 IPR006636 -
Pte10g00279 492 SMART CBM 149 195 IPR006636 -
Pte10g00279 492 CDD Ubl_Dsk2p_like 19 91 - -
Pte10g00279 492 MobiDBLite consensus disorder prediction 98 124 - -
Pte10g00279 492 MobiDBLite consensus disorder prediction 274 355 - -
Pte10g00279 492 FunFam Ubiquitin domain-containing protein DSK2b 196 252 - -
Pte10g00279 492 PANTHER UBIQUILIN 16 432 IPR015496 -
Pte10g00279 492 ProSiteProfiles Ubiquitin domain profile. 19 88 IPR000626 GO:0005515
Pte10g00279 492 Pfam Ubiquitin family 21 88 IPR000626 GO:0005515
Pte10g00279 492 SMART ubq_7 19 90 IPR000626 GO:0005515
Pte10g00279 492 Gene3D - 7 102 - -
Pte10g00279 492 FunFam Ubiquitin domain-containing protein DSK2b 16 103 - -
Pte10g00279 492 SUPERFAMILY Ubiquitin-like 10 101 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00279 Pte-Chr10 2378898 2383512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00279 23 88 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.303 3.65e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00279 K04523 - qsa:O6P43_024949 594.349