Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00259 ATGGCGGATTCACCTCGCAGAAGAGATTCAAGGTCTCCTTCTCCTTGGAGAAATCAGTCGAGGTCCAGATCTAGGTCAGCGTCTTTACCAAGGCCTAGGTCTAGGTCCAGATCGCCATCTTTGTCTAGACGAAGGGGAAGATCACGTTCCAGAAGTCGTGGGAGATCAAGGTCAAGAAGTCATGGCAGGACTGAAGTAGGTAATCCTGGGGATACACTTTATGTGACTGGCCTGTCTTCAAGGGTTACTGAAAGGGACCTTGAAGATCATTTTTCAAAAGAGGGAAAGGTGGCTTCATGTTTTCTGGTAGTGGAGCCTCGGACACGGATTTCTCGTGGTTTTGCATTTGTTACTATGGAGACCGTTGAGGATGCCAATCGATGTGTTAAACATCTCAACCAGTCTGTTCTGGAAGGTCGTTATATTACCGTTGAGAAGTCACGAAGAAGACGGGCAAGAACACCAACACCTGGACATTACCTTGGACTAAAAAGTAGCAGGGATAATGGCTATCGTGGGGACCGTGGTAGTAGATATCGAGGTGGTGACCGTGGTCGTGAAGATTATGGATATCACAGGTCTCCAAGGCACTCACCTTACCGTGGTGGCAGGGATTATTCCCCTAGGCGCTCCCCTTATGGAAGTAGGTCTCGGAGGGAAAGGTCCAGATCACTTCCATATTCTCCTTATGGTAGCCCAGATAGGAGGTATGCACGGGGTTCTAGGTGA 729 0.4883 MADSPRRRDSRSPSPWRNQSRSRSRSASLPRPRSRSRSPSLSRRRGRSRSRSRGRSRSRSHGRTEVGNPGDTLYVTGLSSRVTERDLEDHFSKEGKVASCFLVVEPRTRISRGFAFVTMETVEDANRCVKHLNQSVLEGRYITVEKSRRRRARTPTPGHYLGLKSSRDNGYRGDRGSRYRGGDRGREDYGYHRSPRHSPYRGGRDYSPRRSPYGSRSRRERSRSLPYSPYGSPDRRYARGSR* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00259 242 MobiDBLite consensus disorder prediction 37 58 - -
Pte10g00259 242 Gene3D - 3 155 IPR012677 -
Pte10g00259 242 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 142 IPR000504 GO:0003723
Pte10g00259 242 SUPERFAMILY RNA-binding domain, RBD 67 179 IPR035979 GO:0003676
Pte10g00259 242 SMART rrm1_1 72 145 IPR000504 GO:0003723
Pte10g00259 242 MobiDBLite consensus disorder prediction 168 204 - -
Pte10g00259 242 CDD RRM_SF 73 145 - -
Pte10g00259 242 MobiDBLite consensus disorder prediction 15 36 - -
Pte10g00259 242 MobiDBLite consensus disorder prediction 1 75 - -
Pte10g00259 242 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 58 226 - -
Pte10g00259 242 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 149 IPR000504 GO:0003723
Pte10g00259 242 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 3 155 - -
Pte10g00259 242 MobiDBLite consensus disorder prediction 147 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00259 Pte-Chr10 2279695 2282353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00259 70 153 Eukaryotic Initiation Factors Gene Family AT1G49760 32.143 7.98e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00259 K12897 - twl:120015257 259.996