Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte10g00259 | ATGGCGGATTCACCTCGCAGAAGAGATTCAAGGTCTCCTTCTCCTTGGAGAAATCAGTCGAGGTCCAGATCTAGGTCAGCGTCTTTACCAAGGCCTAGGTCTAGGTCCAGATCGCCATCTTTGTCTAGACGAAGGGGAAGATCACGTTCCAGAAGTCGTGGGAGATCAAGGTCAAGAAGTCATGGCAGGACTGAAGTAGGTAATCCTGGGGATACACTTTATGTGACTGGCCTGTCTTCAAGGGTTACTGAAAGGGACCTTGAAGATCATTTTTCAAAAGAGGGAAAGGTGGCTTCATGTTTTCTGGTAGTGGAGCCTCGGACACGGATTTCTCGTGGTTTTGCATTTGTTACTATGGAGACCGTTGAGGATGCCAATCGATGTGTTAAACATCTCAACCAGTCTGTTCTGGAAGGTCGTTATATTACCGTTGAGAAGTCACGAAGAAGACGGGCAAGAACACCAACACCTGGACATTACCTTGGACTAAAAAGTAGCAGGGATAATGGCTATCGTGGGGACCGTGGTAGTAGATATCGAGGTGGTGACCGTGGTCGTGAAGATTATGGATATCACAGGTCTCCAAGGCACTCACCTTACCGTGGTGGCAGGGATTATTCCCCTAGGCGCTCCCCTTATGGAAGTAGGTCTCGGAGGGAAAGGTCCAGATCACTTCCATATTCTCCTTATGGTAGCCCAGATAGGAGGTATGCACGGGGTTCTAGGTGA | 729 | 0.4883 | MADSPRRRDSRSPSPWRNQSRSRSRSASLPRPRSRSRSPSLSRRRGRSRSRSRGRSRSRSHGRTEVGNPGDTLYVTGLSSRVTERDLEDHFSKEGKVASCFLVVEPRTRISRGFAFVTMETVEDANRCVKHLNQSVLEGRYITVEKSRRRRARTPTPGHYLGLKSSRDNGYRGDRGSRYRGGDRGREDYGYHRSPRHSPYRGGRDYSPRRSPYGSRSRRERSRSLPYSPYGSPDRRYARGSR* | 243 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte10g00259 | 242 | MobiDBLite | consensus disorder prediction | 37 | 58 | - | - | |
Pte10g00259 | 242 | Gene3D | - | 3 | 155 | IPR012677 | - | |
Pte10g00259 | 242 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 73 | 142 | IPR000504 | GO:0003723 | |
Pte10g00259 | 242 | SUPERFAMILY | RNA-binding domain, RBD | 67 | 179 | IPR035979 | GO:0003676 | |
Pte10g00259 | 242 | SMART | rrm1_1 | 72 | 145 | IPR000504 | GO:0003723 | |
Pte10g00259 | 242 | MobiDBLite | consensus disorder prediction | 168 | 204 | - | - | |
Pte10g00259 | 242 | CDD | RRM_SF | 73 | 145 | - | - | |
Pte10g00259 | 242 | MobiDBLite | consensus disorder prediction | 15 | 36 | - | - | |
Pte10g00259 | 242 | MobiDBLite | consensus disorder prediction | 1 | 75 | - | - | |
Pte10g00259 | 242 | PANTHER | TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED | 58 | 226 | - | - | |
Pte10g00259 | 242 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 71 | 149 | IPR000504 | GO:0003723 | |
Pte10g00259 | 242 | FunFam | RNA-binding (RRM/RBD/RNP motifs) family protein | 3 | 155 | - | - | |
Pte10g00259 | 242 | MobiDBLite | consensus disorder prediction | 147 | 242 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte10g00259 | Pte-Chr10 | 2279695 | 2282353 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte10g00259 | 70 | 153 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 32.143 | 7.98e-08 | 50.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte10g00259 | K12897 | - | twl:120015257 | 259.996 |