Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00254 ATGGACTTCTGTGTGCACCCAACTCCACCTCTTGCTTCGTCTACATCTTCTGTCATGGGAAATTTGATTGGAAGAGTGAAAAAAGTTTGTAACTTTGCGGTTTCAGCAATCATTAGCAACATCTTCTCAGCTATCTTCACATTATGTTTTGCATTAGTGGGGGCATTTCTAGGAGCTGTGACTGGAGCATTAATTGGACAAGAAACTGAGAGTGGTTTCATGAGAGGAGCTGCTGTTGGTGCCATATCAGGTGCTGTTTTCTCAATTGAAGTATTTGAATCTTCCCTTGTTCTTTGGCAATCTGATGATTCCGGCATTGGGTGTCTCCTCTACTTGGTTGATGTCATTGCAAGCCTTATAAGTGGGAGATTAGTTCGTGAGAGGATAGGTCCTGCTATGTTAAATGTAGTGCAAAGTCAGATGGCTGCCATTGAAACAAATTTCGACGAGGTGCCTAGCATCTTTGACATTGGTGGCGCTAAAGGATTGCCCGGAGATTTAGTTGAAAACATCCCTAAGATCAAAATTACATGTGAGAACAATGTTGATTCTTCTGGGGAGAAAGCTTCTTGTTCAATTTGCCTCCAGGATTTTCAACTTGGAGACATAGTAAGAAGCTTGCCTCATTGCCATCACATGTTTCACCCTCCTTGCATAGATAAGTGGCTGCTCAAGCATGCTTCTTGCCCACTATGCAGAAGGGATCTATAG 711 0.4276 MDFCVHPTPPLASSTSSVMGNLIGRVKKVCNFAVSAIISNIFSAIFTLCFALVGAFLGAVTGALIGQETESGFMRGAAVGAISGAVFSIEVFESSLVLWQSDDSGIGCLLYLVDVIASLISGRLVRERIGPAMLNVVQSQMAAIETNFDEVPSIFDIGGAKGLPGDLVENIPKIKITCENNVDSSGEKASCSICLQDFQLGDIVRSLPHCHHMFHPPCIDKWLLKHASCPLCRRDL* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00254 236 Pfam Ring finger domain 190 233 IPR001841 -
Pte10g00254 236 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 19 235 IPR044523 -
Pte10g00254 236 FunFam NEP1-interacting protein-like 1 151 236 - -
Pte10g00254 236 CDD RING-H2_NIPL1-like 190 233 - -
Pte10g00254 236 SMART ring_2 191 232 IPR001841 -
Pte10g00254 236 ProSiteProfiles Zinc finger RING-type profile. 191 233 IPR001841 -
Pte10g00254 236 SUPERFAMILY RING/U-box 182 236 - -
Pte10g00254 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 236 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00254 Pte-Chr10 2227502 2228726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00254 21 237 C3H Transcription Factor Family AT5G66070 70.968 3.02e-112 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00254 - - qsa:O6P43_033568 385.185