Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00247 ATGGATGTCCCTTCACTTTTCCAAGTGATAAGCTCTCAGATTTGTATGCAGATGATGTGTGATCTAAACCAACAGCAATCGGCATCCGATAGTGAAGATGCAACCACGTCCACATTGATCAAGACCAGCCGTGCAGATGTTGATTTGTGTTCTGTCTGTTTGTCGAGGTTAAAGCAAGAGGATGACATGCGTGTTCTTCCTTGCTCTCACCAGTTTCATAGGTTATGCGTTGATAGATGGTTCAGAGGTCGCTGCAAAACCTGTCCATTGTGCAGGTTTAACGTAGGAGTAGAAGAAGAAAAGGCTTACAGAATGGAATCATTTAGTGAAGAGATGGTGATTTGGTTTTCATCTTTCCACATAGCAGGTTTCTGA 375 0.4293 MDVPSLFQVISSQICMQMMCDLNQQQSASDSEDATTSTLIKTSRADVDLCSVCLSRLKQEDDMRVLPCSHQFHRLCVDRWFRGRCKTCPLCRFNVGVEEEKAYRMESFSEEMVIWFSSFHIAGF* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00247 124 SUPERFAMILY RING/U-box 49 97 - -
Pte10g00247 124 ProSiteProfiles Zinc finger RING-type profile. 50 92 IPR001841 -
Pte10g00247 124 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 101 IPR013083 -
Pte10g00247 124 SMART ring_2 50 91 IPR001841 -
Pte10g00247 124 Pfam Ring finger domain 49 92 IPR001841 -
Pte10g00247 124 PANTHER TARGET OF ERK KINASE MPK-1 30 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00247 Pte-Chr10 2177600 2178274 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00247 20 93 C3H Transcription Factor Family AT3G55530 38.158 2.06e-11 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00247 - - vvo:131652018 125.176