Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00229 ATGGCCGACGAGGTAAAGAGGTCTACCGGTGTAGTCGTGCGGTTCAACGATGGCAAGGGTTTTGGCTTTATCACACCTGATGATGGAGGTGAAGATCTATTCGTTCACCAATCTTCCATTGTATCGGAAGGCTTTCGCAGCTTGTCCGCAGGCGAACGCGTTGAGTTTTCCATCACTGTTGGTGAGAACCAGAAGACCAAAGCTGTTGATGTCACTGGTCCCAATAGAGCTCCCCTACAAGCTTCCAAGAGAGATAATCATGGTGGCAGTGGAGGTGGTTACTATGCATCGAGGGTGGCTGATGGCCACAACGGAGGTAACGGTGGTGCTGGCTGTTATCATTGTGGCGAGGTTGGTCACTTAGCTCGTGAATGTAACAGCGGAAACAACGTTAGTAGTGGTCGGTGCTTTAAATGCGGTGGTGCTGGGCACATGGCAAGAAACTGCACTCGTGGTAATGGAGGTGGTGGAAATGGCGGTTCTTGTTACAATTGTGGTGAGCGTGGCCACATGGCAAGAGACTGTAATGCTGGAAACAGTGGTGATGGGCCGCTCTGCTATAGGTGTAGGCAATCGGGTCATATGGCTAAGGATTGTAATCAAGAAAGCCGAAGGTTTGGTGGTGGTGGTGACAGAGGGAACAGCTGCTTTCAATGTGGGGATGCTGGTCATTTTGCTAGAGACTGTCCTAATTACGCTTAA 702 0.5028 MADEVKRSTGVVVRFNDGKGFGFITPDDGGEDLFVHQSSIVSEGFRSLSAGERVEFSITVGENQKTKAVDVTGPNRAPLQASKRDNHGGSGGGYYASRVADGHNGGNGGAGCYHCGEVGHLARECNSGNNVSSGRCFKCGGAGHMARNCTRGNGGGGNGGSCYNCGERGHMARDCNAGNSGDGPLCYRCRQSGHMAKDCNQESRRFGGGGDRGNSCFQCGDAGHFARDCPNYA* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00229 233 CDD CSP_CDS 9 73 IPR002059 GO:0003676
Pte10g00229 233 SUPERFAMILY Retrovirus zinc finger-like domains 102 152 IPR036875 GO:0003676|GO:0008270
Pte10g00229 233 PANTHER COLD SHOCK DOMAIN PROTEIN 2 180 232 - -
Pte10g00229 233 SMART csp_8 9 74 IPR011129 GO:0003676
Pte10g00229 233 ProSiteProfiles Zinc finger CCHC-type profile. 216 231 IPR001878 GO:0003676|GO:0008270
Pte10g00229 233 ProSiteProfiles Zinc finger CCHC-type profile. 162 175 IPR001878 GO:0003676|GO:0008270
Pte10g00229 233 ProSiteProfiles Zinc finger CCHC-type profile. 135 151 IPR001878 GO:0003676|GO:0008270
Pte10g00229 233 Gene3D - 208 233 - -
Pte10g00229 233 Pfam Zinc knuckle 161 175 IPR001878 GO:0003676|GO:0008270
Pte10g00229 233 Pfam Zinc knuckle 186 200 IPR001878 GO:0003676|GO:0008270
Pte10g00229 233 Pfam Zinc knuckle 215 231 IPR001878 GO:0003676|GO:0008270
Pte10g00229 233 Pfam Zinc knuckle 135 150 IPR001878 GO:0003676|GO:0008270
Pte10g00229 233 Pfam Zinc knuckle 111 126 IPR001878 GO:0003676|GO:0008270
Pte10g00229 233 ProSiteProfiles Zinc finger CCHC-type profile. 186 201 IPR001878 GO:0003676|GO:0008270
Pte10g00229 233 ProSiteProfiles Cold-shock (CSD) domain profile. 7 73 IPR002059 GO:0003676
Pte10g00229 233 SUPERFAMILY Retrovirus zinc finger-like domains 207 232 IPR036875 GO:0003676|GO:0008270
Pte10g00229 233 SMART c2hcfinal6 185 201 IPR001878 GO:0003676|GO:0008270
Pte10g00229 233 SMART c2hcfinal6 161 177 IPR001878 GO:0003676|GO:0008270
Pte10g00229 233 SMART c2hcfinal6 111 127 IPR001878 GO:0003676|GO:0008270
Pte10g00229 233 SMART c2hcfinal6 215 231 IPR001878 GO:0003676|GO:0008270
Pte10g00229 233 SMART c2hcfinal6 135 151 IPR001878 GO:0003676|GO:0008270
Pte10g00229 233 Pfam 'Cold-shock' DNA-binding domain 9 73 IPR002059 GO:0003676
Pte10g00229 233 ProSitePatterns Cold-shock (CSD) domain signature. 21 40 IPR019844 -
Pte10g00229 233 Gene3D - 157 181 - -
Pte10g00229 233 Gene3D - 182 207 - -
Pte10g00229 233 Gene3D - 107 128 - -
Pte10g00229 233 Gene3D - 129 156 - -
Pte10g00229 233 PRINTS Cold shock protein signature 46 64 IPR002059 GO:0003676
Pte10g00229 233 PRINTS Cold shock protein signature 10 25 IPR002059 GO:0003676
Pte10g00229 233 PRINTS Cold shock protein signature 31 40 IPR002059 GO:0003676
Pte10g00229 233 SUPERFAMILY Retrovirus zinc finger-like domains 153 202 IPR036875 GO:0003676|GO:0008270
Pte10g00229 233 SUPERFAMILY Nucleic acid-binding proteins 4 75 IPR012340 -
Pte10g00229 233 Gene3D - 2 86 IPR012340 -
Pte10g00229 233 ProSiteProfiles Zinc finger CCHC-type profile. 112 125 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00229 Pte-Chr10 2051170 2052632 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Pte10g00229 CSD 5e-23 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00229 K09250 - qsa:O6P43_033606 270.396