Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00211 ATGAGAGCTCGAAAATCCGATAAGGCTAAACCGGTTACCCTTAGAAGGACGCAGCCGGCGAGGAAAAACGTCGTTAAAACCCCTCCAGCAACATCTGATGTGTCTGCCGAAATCGCCGAGACTAGACGTGCCTCTGCTGCCAAATCCAAATTGGCGAAGGTGACAGAGGCCTTTCCTGAGCCTGCCAATAACTCTGATATCAAGACCGATCGATCATCAGCAGAAGAAGGAAGAGCATTGCAAACTGAAGTTGATCAGGTGGTGAAATCATCTTTGAGGAGGACACCAGTAAGAAATAGAGCACATGCAAAGGCTATTTCCACTCCTATAGAAAGAGAAAATGCTGATGAAAAATGTGAAGAATCTGAAAGTCAGGATAATAATGTAGAGATGGAGGTAACTGCTGAAGAGCCTCAAAATGTGGAGGTACCTCAAGCTATTGTGGACTTGAAGGATAATCAAATTGATAGTGTTCAAAAAACTACTCATGATGAGGTAAAGGTGACGGATAGCTATCAATTTGTTGTTAAAAGTCTTGGATCTTCATGGATAGAACAAAAGACTGTGGACTTGAACATAGCAGCTAATGAAGAAGATGGTGATTATGCAGAGAATGGACAGAAAATAGCAAAAGAGAACAAAAATATCGGTGACTATGATGAAAAGAAACAGGATGTGATGGAAGCAGACGTGACAGTTGGAACAGGTGCTGCAGGGCCTCTGAAGCAAGAGGAACCAACCGTCGTGGAGGTAGCAATAGACTCCGAGAATGATGGTACTCACAGTGCAAGAGAAGCAAGGGTAGAATTTAAGGATGAAGAGCTGAAAGATATCAGGTGCCAAAAGGATTTAAAGGAAGAGGATACAACAGATTTTGGAGAGAAAAGTGAATGTCATGGTCAGCCAGCTAATAAGATTGTGAATGAAAAATTACGAGAAGAACATGATCAAGCTCTAGAGGAGAACTTTGCTGGTGATGAAGGAATGGATGGTTATGGTGAGAAATTGGATCTTGGAGAACATAGAGAGGAGGATGACTTGGAGGAGGATCCTGAGGAGCTTCCTGAAGAGACTGAGACGTTAGAAGAAGAAAGAAGGGAGCTCACTGCCAATGCAAAGGAGCGCAAGATTAAAAAGGAGCATGAGATTTTTGTAGGGGGACTTGATCGTGAGGCCACGGAGGAGGACCTGAAGAGGGTTTTTGAGAAGATCGGAGAGGTGTTTGAAGTTAAATTGCACAAAGATCCTTCATCTAATAGAAATAAGGGGTATGCTTTTGTGAAGTTTGCAAATAAGGAACACGCAAAAAGGGCTTTATCAGAAATGAAAAACCCTGTAATACATGGTAAGCGATGTGGAACTGCACCGAGTGAGGACAACGACACCCTGTTTTTGGGCAATATTTGCAATACGTGGACAAAGGAAGCTATCAAACAAAAGCTGAAGGATTATGGTGTTGAAGGTGTTGAAAACATTACCCTGGTACCAGATGCCCTACATGAAGGGTTGAGCCGGGGATTTGCATTTGTTGAGTTTGCTTGTCACGCTGATGCTATGCTCGCTTACAAGAGACTTCAAAAGCCTGATGCCATCTTTGGCCATCCTGAGAGAACAGCTAAAGTAGCATTTGCTGAACCCATTCGTGAGGCGGACCCAGAGATTATGGCTCAGGTGAAGTCTGTATTTGTTGATGGACTCCCCCCTCACTGGGATGAAGATTGTGTCAGAGAGCAATTTAAAGGTTACGGTGAAATTGTAAAAATTGTTCTAGCCCGGAATATGTCTACAGCTAAGAGGAGGGATTTTGGTTTTATCGATTTCTCTACCCACGAATTTGCTGTTGCTTGTGTGGATGGCATAAACAATTCAGAATTCTGCGATGGAAGTTCAAAGGTTAAAATCAGAGCCAGACTATCAAATCCTTTGCCCAAAACCCAGGCTGTTAAAGGTGGCATGTGTGGTGGTTTTAGAATCAGTCATGCAAGGAGTGGAAGCTTTCCAAGAAGGGGTTTTCTGCAGGGAGGGCGTTCCATACATAGGTGGAATTTCCATCATGGGAGGGACTTCAACCATGGTGCACGCAGTCAAAACGGAAGAATGAGCTTCCATGACCTGCATCATGACAATCCGTACTCTGATTATCCAAGGAGGCAATTTGTTCCTCGAGGGGGAAGGAGAGGTGCTCCTAGAGATGTACATTTTGTGCCTAGACGAGGCGTCGGCGGCAGCATGCCATTTCGACCTTATTTTGATAGGCCATGGTATTCTGTCCCTGATGATCCAAGAAATAATATGCCACCAAGGAGGCCGTTTTCTCCTGAGGCACCATTTGACAGATCTTTAATTGGAAGGCCTTATGAGGATCCATATTTATATGATGATAACGTGCATGGTGTGAAGCGCTCACTACACATGACAACAAATCAAGAACGTGATTACATGGGACCTAGTAGACGACCGAGATTGGATTATACCGAACCAGCACCTTTCTATCCTGGAAATCGTTTCCCTGGTTCCTTTGGAGCTGGCAGCAGTCTCTACTCAAATGATTACTACGCTGATTACGGCGGAGGTCCTCATTCAGATTTCCCTAGGGATGAGGCTTCGTACAGACGCGGATACTACTATTAG 2631 0.442 MRARKSDKAKPVTLRRTQPARKNVVKTPPATSDVSAEIAETRRASAAKSKLAKVTEAFPEPANNSDIKTDRSSAEEGRALQTEVDQVVKSSLRRTPVRNRAHAKAISTPIERENADEKCEESESQDNNVEMEVTAEEPQNVEVPQAIVDLKDNQIDSVQKTTHDEVKVTDSYQFVVKSLGSSWIEQKTVDLNIAANEEDGDYAENGQKIAKENKNIGDYDEKKQDVMEADVTVGTGAAGPLKQEEPTVVEVAIDSENDGTHSAREARVEFKDEELKDIRCQKDLKEEDTTDFGEKSECHGQPANKIVNEKLREEHDQALEENFAGDEGMDGYGEKLDLGEHREEDDLEEDPEELPEETETLEEERRELTANAKERKIKKEHEIFVGGLDREATEEDLKRVFEKIGEVFEVKLHKDPSSNRNKGYAFVKFANKEHAKRALSEMKNPVIHGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGVEGVENITLVPDALHEGLSRGFAFVEFACHADAMLAYKRLQKPDAIFGHPERTAKVAFAEPIREADPEIMAQVKSVFVDGLPPHWDEDCVREQFKGYGEIVKIVLARNMSTAKRRDFGFIDFSTHEFAVACVDGINNSEFCDGSSKVKIRARLSNPLPKTQAVKGGMCGGFRISHARSGSFPRRGFLQGGRSIHRWNFHHGRDFNHGARSQNGRMSFHDLHHDNPYSDYPRRQFVPRGGRRGAPRDVHFVPRRGVGGSMPFRPYFDRPWYSVPDDPRNNMPPRRPFSPEAPFDRSLIGRPYEDPYLYDDNVHGVKRSLHMTTNQERDYMGPSRRPRLDYTEPAPFYPGNRFPGSFGAGSSLYSNDYYADYGGGPHSDFPRDEASYRRGYYY* 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00211 876 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 383 451 IPR000504 GO:0003723
Pte10g00211 876 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 561 626 IPR000504 GO:0003723
Pte10g00211 876 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 463 527 IPR000504 GO:0003723
Pte10g00211 876 FunFam Heterogeneous nuclear ribonucleoprotein Q 546 699 - -
Pte10g00211 876 MobiDBLite consensus disorder prediction 1 143 - -
Pte10g00211 876 MobiDBLite consensus disorder prediction 341 366 - -
Pte10g00211 876 FunFam Heterogeneous nuclear ribonucleoprotein Q 461 545 - -
Pte10g00211 876 CDD RRM_SF 561 635 - -
Pte10g00211 876 Gene3D - 548 655 IPR012677 -
Pte10g00211 876 Coils Coil 112 132 - -
Pte10g00211 876 Coils Coil 358 378 - -
Pte10g00211 876 CDD RRM_SF 383 452 - -
Pte10g00211 876 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 381 459 IPR000504 GO:0003723
Pte10g00211 876 CDD RRM_SF 463 535 - -
Pte10g00211 876 MobiDBLite consensus disorder prediction 105 125 - -
Pte10g00211 876 SUPERFAMILY RNA-binding domain, RBD 552 664 IPR035979 GO:0003676
Pte10g00211 876 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 66 857 - -
Pte10g00211 876 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 461 546 IPR000504 GO:0003723
Pte10g00211 876 SUPERFAMILY RNA-binding domain, RBD 382 525 IPR035979 GO:0003676
Pte10g00211 876 MobiDBLite consensus disorder prediction 343 360 - -
Pte10g00211 876 Gene3D - 334 455 IPR012677 -
Pte10g00211 876 SMART rrm1_1 382 455 IPR000504 GO:0003723
Pte10g00211 876 SMART rrm1_1 560 633 IPR000504 GO:0003723
Pte10g00211 876 SMART rrm1_1 462 539 IPR000504 GO:0003723
Pte10g00211 876 Gene3D - 460 545 IPR012677 -
Pte10g00211 876 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 559 641 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00211 Pte-Chr10 1904500 1911769 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00211 383 627 Eukaryotic Initiation Factors Gene Family AT2G23350 25.000 8.86e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00211 - - qsa:O6P43_033630 863.603