Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00204 ATGGAAGAGTTGCAGCAAAAGCAACCAGCTTCGACGTTGGAGGTCGATAGGCTTTCTCTCCAACTGCAGCAGCAGTCACGGTCGGGAAGCTGCTTGGAACAGTGTTTCAGAGAACCGGAAGGAATCAAGGACGTGGATCAGTGCCGTAGTATTGGAAATATGGAGGATTCTCAGCTCGTTGGAGTTCCTGTGACGCTCGCTGGTGATGCTGATTTGATGAAGACTGATGATGGAAGCTTCACTAATATAGAAGTCAAAGTTGACGTCAAGGTACCCGAAACCAATTTGGTGAAGCGGAAGCGTGGTCGGCCGCCGAAGGTTCAAGCCAGAACTATGGCGCCGGTGAGGAAACAGAAGGACGAGGAAGACGTATGTTTTATTTGCTTCGATGGTGGGAGTCTCGTGCTCTGTGATCGCCGGGGCTGTCCTAAGGCATACCATCCAGCATGCATTAAGCGAGATGAGGCATTCTTCCGCTCAAGAGCAAAATGGAATTGTGGTTGGCATATTTGCAGCAGTTGTCAGAAGTCATCTCATTACATGTGTTATACGTGTACATATTCATTATGTAAGGGATGCACAAAAGATGCTGACTATCTCTGTGTGAGAGGAAACTTTGGGTTTTGTGGAACATGTATGAGAACTATAAAGCTTATTGAGGATAGTGCTCAAGGAAACAAGGAAAAGTGTGAAGTAGATTTTGATGATAAAAGCAGTTGGGAGTATCTATTCAAGGTTTATTGGATGTACCTAAAAAGCAAACTCTCTTTAACATTAGATGAGCTAACTCATGCACAAAGTCCATGGAAAGGATACGTTGTAATGGGTCCTACTGGTCAATCTTCGCGTGTACTTAATCGCAGCAGAGACGAAAGATTTTCAATTCCTGGAAACTCCAGTTTATATATTGAAACAAGCGATTCCAAAAGGAGAAAGACTTCAGATGACTCAAATTTTATCAACAAGGAGGACTCTAAATCTATGAAAGCATCAGGAGTTGATAAAAAGCTGACTTTGTCTGAATCTACAAAATGGGCATCTGACACGCTGTTGGAGTTTGTTGAACATATGAAAAATGGGGATACATCTGTTCTATCGCAATTTGATGTGCAGGCTCTACTGTTGGAATATATTAAGAAGAACAATCTTCATGATCCCCTCCAGAAATGTCAAATTATTTGTGATTCAAGGCTAATAAATTTGTTTGGAAAAGCACGCTTAGACAATGAGGAAATGCTGAAGCTACTTGAATTGCATTTTTTCAATAGAGAGAATACTTCTGCAGAAAATGGTCCTAACCTGAGAAATCTTGATACTGTTGCTGGACGAGGGGAGACTAATGGGCCTTCTGAGAACCAACTGATAATTGGTGGTGATGATAGGTGTAAAACTCGAAAAATTATTGATCTACAAGCTCCAGAGAATGATCTAAATGCATATGCAGCAATTAGTAGTCACAACATTAAGTTAATTTATTTGTGTCGCAGTCAGATGGAAAATTTAGTTGAGGATGTTGAACAGTTCCATCAAAAGGTTGTGGGCTCAATTGTTCGGGTAAAAATTCCCAATGGTGATCAGAAGCCAGATATGTATAGGCTTGTCCAAGTCATAGGCACAAGCAAGGTAGCTTGGCGGTACAACATTGGTACAAGAACAACTGACTTGATGCTCGAAGTGATAAATTTAAATAAGAAAGAGGTCATTTCAATTGATGGGATCTCAGATCAGGAATTCTCTGAGGAAGAATGTAAACGTTTTCGCCAAAGCATAAAATGTGGACTCTCCAAGTGCCTGACTGTGCGTGAAGTTCAGGAGAAGGCAATGACATTTCAGGCCATGAGATTTAACAACTTATTGAACTCGCAAGAGGAATGGCAGCGCAGGCTACACGAAATTCCAGAGATTCACTCTGATCCTAAAATGGATCCAAGCTACGAATCTGATGATGAAGATGATGGTTATGCTGGAGTTCAAGAGGGGAAAAAAGATGACAATTTGAGATTAAAAGGTAATGACTTTAATAGGAAAGAGGCAGAATCTATCTCTCCAAGAAGCAGGAATTATGTCTTGAATGATGAGCGAAGCAGGGTAAACAACACATTAGCTATCCGTTCCAATCAACTGGGTGGAAAATCTGTTGTTGAAAATGCAATCAATCCCACTGTTCAAGGAAATGAGGATTCTAATGATGCAATGGTGATGATATCGTCTCTACTTGCCTCTGATATTCTACCTTTGCCAAACTTGAAAAGGATGGAGCAATCGGTAGATAATTTTGAGTCTGATAATATATGGCGTTATCAGGATCCGTCTGGAAAAACTCAAGGACCATTTTCCTTGTTTCAACTGCGAAAATGGTATGCAGCTGGACATTTCCCTGCAGATCTAAGAGTATGGAGGACTGACCAGAAAAAAGATGATTCTATCTTGTTAACTGATGCACTAAATGGTAAATGTGATGAAATTGTGTCACCTGGCCAATTTATATCGCTGGGTGTCACAGTTTCCACAGATGAAGGTGATTGTTGCAAGAATTATGGAATAAGCAATTCAGACAATAGTATTGACCAAAAGCTGAAGAAGGGTAGCCCCCACCACAATGGTAGTGATGAATCAGTCAAGAGCAATGGATGGAACTGTCATTTGTCTGGTAATAGTAAACATGCAGATTTTGTGAAGGCAAAAGAGGGGCAGAGTGAAGGCACCCAAACGAGTTTGGATTTGGCAAAATGGGATGTACTAAGTCATGGTAAAGCCCACGCCAGCCAACCATTACCTTCAACTGCATTTACTGCAATGGTGCATGAGATTACTTCTGAACATGAAAGGCAAGGTTATAGGATTGATATAAACTCTGATGCCAATGACGGCAACCAGAATTTGCTCAAGACTTCTGTCTTTCGCGGTGATCAAGATCTTCTGAAGCAATCAGACAGTGAAGGTCACTCTGGCCAATCTTCAGAGCCTAGCTGGAGACATCCTCGCATAAGTGGTTTCTCTGGTTGCTTGGACTCGACTTCTTCTTTTGTTTCTATGTCTAAAGTAACAGAGCAAAATCAGGCAACCAATATCCCAGATATCCCTAGTTCAACTGCTGTAACCGGTTGGGCTTCCAAATCTACTTTTGCTTCTGTTACTAAAGCGTTGCAGCCACATGAGGAGATTGATTTTTTTGAGTTGCCAAGTCCGACTCCCAGGCCAAGTTATGTGGTGAGAAGTCAGGCAGGCAAGAACAAACAGTCTCCATCTTCAAATATTCCAGTTCATGATTCTTGTCATAGCTGGAGCACTTCTTCGAGTTTGGTGGGCGGTCCTGTACCACATCCTGAAACAGCCGTGGAATGGAGAGAATATTCAACTATGCCTACCAAAACATCCGTTGAGGAATGGGATTCCAGTTTTGTCGCTACTTCCTCTCTGACATCAACCAAAATAATGGCTGACCATGCTGCTACTCCATCGTCAATAAATTGTGAACAAACTCATTCTCCCCCACCAAAAACAGCCTGTAACGAGTCTAATTGGAATGCAATAATTGGCGAGGGAAATGAATTTAACTCATTCGTGGATGAATCAGTTTCTGAGCTGTTGGCTGAGGTTGAGGCCATGGAGTCTCTTGGTGGACTGGATTCTCCCACATCCATTATGAACTGTGGAGAGGAAGTAACAGATGGATCTAAGAATGATTGTCTCAGTTCTGCCGAAGGACTTAGCCCTATGCCAGATCAAGGTAAAGGCGATGCACTGAGCTCCACGACTGCTGCAAAGTTACCTACTCATTCCTCTGTGAGTGAAGCACCACATGCAGGATACCAAGCAGATATGCTCCATTTCCAAAGGATATCCACTCCGCTTCCCACTGCATGTGATCAGTTTGGAGGAGCTACAAAGAAGAGTGATACAATAGGTCGCCAATGGGGAGCAGGTGCTGATATCCCAGTCTCAGTACAACCATCTACTACAACTTGGGAGGTAACAGACACCACTTGGAGATTGGGGTTAGATAATACAAACCCTAGTTGGGGGTCAACTCAGGGAAATACAAACGTAGGCTGGAGTGCATTGAAGGACGGAAATTCAAATATGAATTGGGGTGTTGCTCAGGGCTCTGTGCATGAAAATGGAAGCCTTAGTTCTTGCACAACCACAGGTTATCCAGTCGGTTGGGGAACCCAATCAAGATATGTCAATGATAGATTGGTTTTTCCTCAAAACGGTGACTTTCATGGCAGAGAATCTAGTTTTGAGAGGGGTAGGGCTGTGGACAGGCAACCATTCTTTGGCATGGTTAATGGTGGAGGGAGTCACAATCAAAGTCACAGACATGCGCCAAAAGGGCAGCGAGTCTGTAAATATTACGAACGCGGGCATTGCAAGAAGGGAGCGTCATGCAGTTATTGGCATCCATGA 4410 0.4279 MEELQQKQPASTLEVDRLSLQLQQQSRSGSCLEQCFREPEGIKDVDQCRSIGNMEDSQLVGVPVTLAGDADLMKTDDGSFTNIEVKVDVKVPETNLVKRKRGRPPKVQARTMAPVRKQKDEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEAFFRSRAKWNCGWHICSSCQKSSHYMCYTCTYSLCKGCTKDADYLCVRGNFGFCGTCMRTIKLIEDSAQGNKEKCEVDFDDKSSWEYLFKVYWMYLKSKLSLTLDELTHAQSPWKGYVVMGPTGQSSRVLNRSRDERFSIPGNSSLYIETSDSKRRKTSDDSNFINKEDSKSMKASGVDKKLTLSESTKWASDTLLEFVEHMKNGDTSVLSQFDVQALLLEYIKKNNLHDPLQKCQIICDSRLINLFGKARLDNEEMLKLLELHFFNRENTSAENGPNLRNLDTVAGRGETNGPSENQLIIGGDDRCKTRKIIDLQAPENDLNAYAAISSHNIKLIYLCRSQMENLVEDVEQFHQKVVGSIVRVKIPNGDQKPDMYRLVQVIGTSKVAWRYNIGTRTTDLMLEVINLNKKEVISIDGISDQEFSEEECKRFRQSIKCGLSKCLTVREVQEKAMTFQAMRFNNLLNSQEEWQRRLHEIPEIHSDPKMDPSYESDDEDDGYAGVQEGKKDDNLRLKGNDFNRKEAESISPRSRNYVLNDERSRVNNTLAIRSNQLGGKSVVENAINPTVQGNEDSNDAMVMISSLLASDILPLPNLKRMEQSVDNFESDNIWRYQDPSGKTQGPFSLFQLRKWYAAGHFPADLRVWRTDQKKDDSILLTDALNGKCDEIVSPGQFISLGVTVSTDEGDCCKNYGISNSDNSIDQKLKKGSPHHNGSDESVKSNGWNCHLSGNSKHADFVKAKEGQSEGTQTSLDLAKWDVLSHGKAHASQPLPSTAFTAMVHEITSEHERQGYRIDINSDANDGNQNLLKTSVFRGDQDLLKQSDSEGHSGQSSEPSWRHPRISGFSGCLDSTSSFVSMSKVTEQNQATNIPDIPSSTAVTGWASKSTFASVTKALQPHEEIDFFELPSPTPRPSYVVRSQAGKNKQSPSSNIPVHDSCHSWSTSSSLVGGPVPHPETAVEWREYSTMPTKTSVEEWDSSFVATSSLTSTKIMADHAATPSSINCEQTHSPPPKTACNESNWNAIIGEGNEFNSFVDESVSELLAEVEAMESLGGLDSPTSIMNCGEEVTDGSKNDCLSSAEGLSPMPDQGKGDALSSTTAAKLPTHSSVSEAPHAGYQADMLHFQRISTPLPTACDQFGGATKKSDTIGRQWGAGADIPVSVQPSTTTWEVTDTTWRLGLDNTNPSWGSTQGNTNVGWSALKDGNSNMNWGVAQGSVHENGSLSSCTTTGYPVGWGTQSRYVNDRLVFPQNGDFHGRESSFERGRAVDRQPFFGMVNGGGSHNQSHRHAPKGQRVCKYYERGHCKKGASCSYWHP* 1470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00204 1469 ProSiteProfiles GYF domain profile. 762 816 IPR003169 GO:0005515
Pte10g00204 1469 FunFam Zinc finger CCCH domain-containing protein 19 114 214 - -
Pte10g00204 1469 Pfam Plus-3 domain 487 590 IPR004343 GO:0003677
Pte10g00204 1469 SUPERFAMILY CCCH zinc finger 1444 1468 IPR036855 GO:0046872
Pte10g00204 1469 SMART rtf1 482 592 IPR004343 GO:0003677
Pte10g00204 1469 CDD SWIB-MDM2_like 345 420 - -
Pte10g00204 1469 ProSiteProfiles Zinc finger PHD-type profile. 122 188 IPR019787 -
Pte10g00204 1469 MobiDBLite consensus disorder prediction 975 993 - -
Pte10g00204 1469 MobiDBLite consensus disorder prediction 854 879 - -
Pte10g00204 1469 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 1029 1469 - -
Pte10g00204 1469 Gene3D SWIB/MDM2 domain 331 430 IPR036885 -
Pte10g00204 1469 MobiDBLite consensus disorder prediction 1232 1264 - -
Pte10g00204 1469 MobiDBLite consensus disorder prediction 633 671 - -
Pte10g00204 1469 MobiDBLite consensus disorder prediction 1067 1104 - -
Pte10g00204 1469 SUPERFAMILY SWIB/MDM2 domain 343 424 IPR036885 -
Pte10g00204 1469 Pfam SWIB/MDM2 domain 347 420 IPR003121 -
Pte10g00204 1469 ProSitePatterns Zinc finger PHD-type signature. 125 185 IPR019786 -
Pte10g00204 1469 Gene3D - 764 819 IPR035445 -
Pte10g00204 1469 MobiDBLite consensus disorder prediction 975 997 - -
Pte10g00204 1469 CDD PHD5_NSD 124 169 - -
Pte10g00204 1469 ProSiteProfiles SWIB/MDM2 domain profile. 339 422 IPR003121 -
Pte10g00204 1469 SUPERFAMILY GYF domain 761 815 IPR035445 -
Pte10g00204 1469 MobiDBLite consensus disorder prediction 1245 1260 - -
Pte10g00204 1469 CDD GYF 762 817 IPR003169 GO:0005515
Pte10g00204 1469 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 212 IPR013083 -
Pte10g00204 1469 SUPERFAMILY FYVE/PHD zinc finger 92 169 IPR011011 -
Pte10g00204 1469 Gene3D - 483 612 IPR036128 GO:0003677
Pte10g00204 1469 SMART gyf_5 763 818 IPR003169 GO:0005515
Pte10g00204 1469 SUPERFAMILY Plus3-like 483 611 IPR036128 GO:0003677
Pte10g00204 1469 SMART swib_2 333 425 IPR019835 -
Pte10g00204 1469 ProSiteProfiles Zinc finger C3H1-type profile. 1444 1469 IPR000571 GO:0046872
Pte10g00204 1469 ProSiteProfiles Plus3 domain profile. 482 615 IPR004343 GO:0003677
Pte10g00204 1469 SMART PHD_3 124 170 IPR001965 -
Pte10g00204 1469 Pfam GYF domain 765 804 IPR003169 GO:0005515
Pte10g00204 1469 MobiDBLite consensus disorder prediction 1059 1108 - -
Pte10g00204 1469 MobiDBLite consensus disorder prediction 654 671 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00204 Pte-Chr10 1803771 1810703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00204 40 174 PHD Transcription Factor Family AT5G58610 27.941 1.10e-06 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Pte10g00204 Plus-3 8.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00204 - - zju:107424392 1247.26