Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00201 ATGGAATGCGTAGAAGCGGCCTTGAAAACCAGTTTCAGAAAGGAGATGGCCATGAAAACAAGCTCACAGGCGACTCTTGAGGATATGTGTGTTTTGAATGCCCAAAATGGCGCGCCTTCTGATGAATTCTCTGTGGACGACCTTCTGGACTTCTCAAACCAAGAAGCGCTTCTTGAGGAACAAGTACACCAAGAGGAAGAGGAAAACAAGGTTGTCTCTGTCTCTCTCGCTGTTTCTCCTCAAAAGGACACGCAGTGGCATGGACCTTTTATTCCATGTTCCATTTTCACTGCCAAAAACGATTTTGGGTCTCTACCCCACAACGAACTCAATGTTCCGGTTGACGAACTAGCGGACTTAGAATGGTTGTCGCATTTTGTGGATGATTCCTTCTCCGAACACTCTGCTTCGGATACCTACTCATCTGGAACATTTACAGAGGAACGAACGCAGCATGCACTTGCAGAGGAAAAAATTCCTGAACCGATAAACACCCTTGAAGTCACGAATAAGACTTGTTTCAACTCTCCGGTACCGGCAAAAGCCCGAAGCAAACGAACCAGAACTGTTCTTCGTGTTTGGTCCCTTGGGTCTCCACCTCTCACGGAGTCTTCCTCTTGTTCCACCTCTTCTTCCTCCTCATCCTCCCCTCCTGCCCCGTGCCTTATGTACGCAATTAACACCACCCAGCACTCCCAACCGGTTTCCACCAACGAAGCTACCAAACCGTTGGCGAAGAAGCCCAAGAAAAACACAGTTGGTAACTGGTCAGGGCTCAGCAGTGTTGTTGGTGCAGGCCAAGCACCACGTCGGTGCAGCCATTGCGGCGTACAGAAGACACCACAGTGGAGAGCGGGTCCACTCGGAGCCAAAACCCTTTGTAACGCATGTGGGGTAAGACACAAGTCGGGTCGACTCTTACCCGAATATAGACCAGCATGTAGCCCCACGTTTTCGAGCGAACTGCACTCAAACCATCACCGTAAAGTTCTGGAGATGCGGCGGAAGAAAGAGCTAACGTCCGGACTTGACTCCGGTCTAACTACTACAGCAGTCCCTAGTTTTTGA 1068 0.4991 MECVEAALKTSFRKEMAMKTSSQATLEDMCVLNAQNGAPSDEFSVDDLLDFSNQEALLEEQVHQEEEENKVVSVSLAVSPQKDTQWHGPFIPCSIFTAKNDFGSLPHNELNVPVDELADLEWLSHFVDDSFSEHSASDTYSSGTFTEERTQHALAEEKIPEPINTLEVTNKTCFNSPVPAKARSKRTRTVLRVWSLGSPPLTESSSCSTSSSSSSSPPAPCLMYAINTTQHSQPVSTNEATKPLAKKPKKNTVGNWSGLSSVVGAGQAPRRCSHCGVQKTPQWRAGPLGAKTLCNACGVRHKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKELTSGLDSGLTTTAVPSF* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00201 355 MobiDBLite consensus disorder prediction 199 256 - -
Pte10g00201 355 ProSiteProfiles GATA-type zinc finger domain profile. 266 302 IPR000679 GO:0006355|GO:0043565
Pte10g00201 355 Coils Coil 48 68 - -
Pte10g00201 355 Gene3D - 264 339 IPR013088 GO:0006355|GO:0008270
Pte10g00201 355 FunFam GATA transcription factor 264 346 - -
Pte10g00201 355 CDD ZnF_GATA 271 319 IPR000679 GO:0006355|GO:0043565
Pte10g00201 355 ProSitePatterns GATA-type zinc finger domain. 272 297 IPR000679 GO:0006355|GO:0043565
Pte10g00201 355 PIRSF Txn_fac_GATA_plant 1 352 IPR016679 GO:0003677|GO:0005634|GO:0045893
Pte10g00201 355 Pfam GATA zinc finger 272 306 IPR000679 GO:0006355|GO:0043565
Pte10g00201 355 MobiDBLite consensus disorder prediction 199 240 - -
Pte10g00201 355 PANTHER GATA TRANSCRIPTION FACTOR 31 338 - -
Pte10g00201 355 SMART GATA_3 266 320 IPR000679 GO:0006355|GO:0043565
Pte10g00201 355 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 266 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00201 Pte-Chr10 1779675 1781611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00201 5 356 C2C2-Gata Transcription Factor Family AT5G66320 53.221 1.07e-88 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pte10g00201 GATA 1.5e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00201 - - qsa:O6P43_033646 374.015