Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00172 ATGATCCATGAACTGTTGGGAGGTGCAGGTCTTCTAGCAGGAGAGAGGAAAATCTCCACTAATGGAGGAAAAATAGATGCCAGATCTTGTCCTTCTCTCACTACTTCGAGTTCTCCTTCCCTGACAAGGAGCAATGTGACCTCCACTGCTGTTGATACTTCAAATTCAGAAAGCCAAAACCTGAGATGTCCTAGATGTGATTCATCCAACACCAAGTTTTGCTACTACAATAACTACAACCTCACTCAGCCCCGGCATTTCTGCAAGACATGTCGGCGTTATTGGACTAAAGGTGGTGCTCTGAGGAATGTTCCAATAGGAGGAGGCTGTCGGAAAAACAAAAATGCAAATGTGTCCTCTTCGGTCGCCAAGGCAAGTGCTGCAAGGATGAAGACAGTTGTATCAGAGATAGGAAGGTCAGTTCTTGCTGGGCAGTTCGATCAAGACCTTCCAGTTGCATCAAGCCCAATTTTATGGGGTTCACCACAAAATTCTCATTTGTTGTCCTTGCTGAGAGCTAACCATAATAAAAACCCTAACCCTAGTTCCATCTCAAGTACTGTGATTGCAAAGGAGGAAGGCAACATAATAGGAACCCGCTTGGCTACTGCACCACTGGTTGCAAATAACCTTATGAGTAGTCGTGTCCTGGATTCCGATTTCCATATGCAACCTTCTTCCCTTGGTTTATGCAAGAGCTCTCTTTGGAGGAACAATCAATATCAACCTCAACAGCACATTGGAACATTAATGGCCGAACTTCCAAACGATGGGCTTCAAGAACTATATCAGAGGCTTAGGTCATCATCAGCCAATAATTGTGCAGACAACTCACCAATGTTTCTGAACAACCCGGTGATGTCTTCTTCATCCTTCTTCGAGTCAGCACCAGTCACCGGAAGTGAATTAGGGTACGGAAATTCCGTGATTTCCTCCTGGTTTGATATTCCAACGGGACACGATTAG 966 0.4493 MIHELLGGAGLLAGERKISTNGGKIDARSCPSLTTSSSPSLTRSNVTSTAVDTSNSESQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNANVSSSVAKASAARMKTVVSEIGRSVLAGQFDQDLPVASSPILWGSPQNSHLLSLLRANHNKNPNPSSISSTVIAKEEGNIIGTRLATAPLVANNLMSSRVLDSDFHMQPSSLGLCKSSLWRNNQYQPQQHIGTLMAELPNDGLQELYQRLRSSSANNCADNSPMFLNNPVMSSSSFFESAPVTGSELGYGNSVISSWFDIPTGHD* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00172 321 ProSiteProfiles Zinc finger Dof-type profile. 61 115 IPR003851 GO:0003677|GO:0006355
Pte10g00172 321 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 53 233 IPR045174 GO:0003700|GO:0006355
Pte10g00172 321 ProSitePatterns Zinc finger Dof-type signature. 63 99 IPR003851 GO:0003677|GO:0006355
Pte10g00172 321 MobiDBLite consensus disorder prediction 29 61 - -
Pte10g00172 321 Pfam Dof domain, zinc finger 59 115 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00172 Pte-Chr10 1542240 1543466 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00172 27 147 C2C2-Dof Transcription Factor Family AT5G60200 51.200 5.68e-34 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pte10g00172 zf-Dof 2.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00172 - - qsu:112033100 342.428