Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00152 ATGGGTTGGCTCACAAAATTTTTTAAGGGTCCTAGTCACAAATTTCCTGGAGGGCATCAACATCAGAGAAATGGAGGCCACAGTAGCTGGGGCGATCATCGAAATTCAGCAGATGGTCTGGGAGATTTTGACAAAGAAGAAATTGATTGTGCAATTGCGTTGTCCCTTTCAGAGGTGGATCAAAAAGGGAAAAAAATGATTGAGGAAGAATCTGAATCAGAGGAAGATGAAAGAGTGACCAAAGTGGAAGAAGAAGAAGAGGAAGATGAAGAAGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAAGAAGGGGAGGATGAGGAGGAGCATGAAGAAAAACGAGTTACTAAAGTTGAAGAAGATGACCAACACTCCAAATTGCAACTGGAGGAAGATGAACAGCTTGCCAGGGCTATTCAGGAGAGTTTGAGTTCGGAATCTCCTCCTCGACATAACAGTGGATCTACATTTCAACCGTATCCCTTCTTTTTTCCATCAAGTTACAGGATTTGTGCAGGCTGCAAGGCTGAGATAGGTCATGGAAGATTTTTAAGTTGCATGGGTGCAGTATGGCATCCAGATTGCTTCTGTTGCCATTCTTGCAATCTACCAATTACAGATTATGAGTTCTCCATGTCTGGGGATCGTCCATACCATAAATCCTGTTACCGGGAGCAGCACCATCCAAGATGTGATGTTTGTAAGAACTTTATTCCAACAAATTCAGCTGGTCTTATTGAGTATAGAGCACATCCTTTCTGGATGCAAAAATACTGTCCATCACATGAACGTGATGGTACTCCTCGTTGCTGTAGTTGTGAAAGAATGGAGCAAAGAGACACAAAATATCTTTTACTTGATGATGGTCGAAAGCTATGTCTAGAGTGTCTAGACTCAGCAATCATGGACACTCACGAATGCCAGCCCCTTTACCTTGAAATACAAGAATTTTATGAGGGTTTGAACATGAAGGTGGAGCAGCAGATACCCATGCTCTTGGTTGAGAGACAAGCATTGAATGAGGCCATGGAGGGAGAGAAAAATGGTCATCATCATTTACCTGAAACCAGAGGACTCTGCCTATCCGAAGAGCAGACTATTACCACTATTTCAAGGAGACCGCGAATTGGAGCAGGGTACAGGATTATAGACATGATAACCGAGCCTTACAGATTGATCCGTCGATGTGAAGTGACTGCTATTCTTGTTTTGTATGGCCTTCCCAGATTGTTGACTGGATCCATCTTGGCTCACGAAATGATGCATGCTTGGCTAAGGCTCAAAGGCTACCCGAATTTAAGTCCAGAAGTTGAAGAAGGAATCTGTCAGGTGTTAGCTCACATGTGGCTGGAGTCAGAGATATATTCTATATCAGGAAGTGACGGTGCATCATCGTCTTCTTCGTCCTCCTCCTCTTCCTCATCATCTTCTTCATCCTCCCCTTCCTCATCATCCAAGAAGGGTAAAAGGTCCGACTTTGAGAAGAAGCTTGGAGAGTTTTTCAAGCATCAGATTGAGTCAGATACATCAGCAGCTTATGGAGATGGATTCAGGTTAGGTAACGAAGCAGTGCTCAAATATGGACTCAGGAGGACCCTTGACCATATCAGGATGACAGGAAGCTTTCCATAA 1641 0.4406 MGWLTKFFKGPSHKFPGGHQHQRNGGHSSWGDHRNSADGLGDFDKEEIDCAIALSLSEVDQKGKKMIEEESESEEDERVTKVEEEEEEDEEEEEEEEEEEEEEEEEGEDEEEHEEKRVTKVEEDDQHSKLQLEEDEQLARAIQESLSSESPPRHNSGSTFQPYPFFFPSSYRICAGCKAEIGHGRFLSCMGAVWHPDCFCCHSCNLPITDYEFSMSGDRPYHKSCYREQHHPRCDVCKNFIPTNSAGLIEYRAHPFWMQKYCPSHERDGTPRCCSCERMEQRDTKYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTITTISRRPRIGAGYRIIDMITEPYRLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLESEIYSISGSDGASSSSSSSSSSSSSSSSSPSSSSKKGKRSDFEKKLGEFFKHQIESDTSAAYGDGFRLGNEAVLKYGLRRTLDHIRMTGSFP* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00152 546 CDD LIM_DA1 174 226 - -
Pte10g00152 546 PANTHER PROTEIN DA1-RELATED 2 3 546 IPR045218 -
Pte10g00152 546 MobiDBLite consensus disorder prediction 72 112 - -
Pte10g00152 546 MobiDBLite consensus disorder prediction 1 42 - -
Pte10g00152 546 Gene3D Cysteine Rich Protein 168 231 - -
Pte10g00152 546 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 201 255 - -
Pte10g00152 546 MobiDBLite consensus disorder prediction 113 131 - -
Pte10g00152 546 SMART lim_4 173 225 IPR001781 -
Pte10g00152 546 MobiDBLite consensus disorder prediction 468 489 - -
Pte10g00152 546 MobiDBLite consensus disorder prediction 468 494 - -
Pte10g00152 546 ProSitePatterns LIM zinc-binding domain signature. 174 208 IPR001781 -
Pte10g00152 546 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 166 199 - -
Pte10g00152 546 MobiDBLite consensus disorder prediction 55 131 - -
Pte10g00152 546 Pfam Protein DA1 323 542 IPR022087 -
Pte10g00152 546 Coils Coil 72 117 - -
Pte10g00152 546 FunFam Protein DA1-related 1 168 227 - -
Pte10g00152 546 ProSiteProfiles LIM domain profile. 172 232 IPR001781 -
Pte10g00152 546 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 133 152 IPR003903 -
Pte10g00152 546 SMART uim 43 62 IPR003903 -
Pte10g00152 546 SMART uim 133 152 IPR003903 -
Pte10g00152 546 Pfam LIM domain 174 229 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00152 Pte-Chr10 1443447 1447119 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pte10g00152 DA1-like 1.3e-106 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00152 - - qsa:O6P43_033761 814.298