Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00148 ATGACTAGTGGCTTTGACGAATCTACTAGCGCTTCATCCAATAATCGATCTTTCTCTCCCAATGGTGGAAACGATGCTGAAGAATTTGAATGCAACATCTGCTTCGAATTGGCTCAAGATCCAGTTGTGACTCTCTGTGGCCATCTCTTCTGTTGGCCATGCCTTTACAGATGGCTTCATCATCATTCACATTCTCAAGAATGTCCTGTTTGTAAGGCTCTAATACAGCAGGAGAAATTAATCCCACTCTATGGAAGGGGCAAAACACAGACTGATCCCAGGACTAAGTCCTATCCAGGTATGGAAATTCCTCGTCGCCCTGCTGGACAGAGGCCTCAAACTGCCCCTCCACCACGACAGAATCCCAATCAGTTTAGCAATTTTGGTTTTGGTTTTATGGGTGGATTTGTACCCATGGCTACTGCAAGATTTGGCAACTTCACGCTTGGTACAGCTTTTGGTGGAATATTCCCATCTCTATTTAATATCCAGTTCCATGGTTTTCCTGATGCCAATGGATATGGGACAAATTCTGGTTTCCCATTTGGGTTCAACGCCTATAATGGAGGGTTTGGACATGCATCCACCCAAGCCAGTCCTGAGCAGCAACAGCAGCAACAGCATGCAGATAGTATGTTAAAGAATATGTTTTTGATGATTGGTATCTTTGTTTTACTTTTTGTTCTCTGGTGGTAG 696 0.4397 MTSGFDESTSASSNNRSFSPNGGNDAEEFECNICFELAQDPVVTLCGHLFCWPCLYRWLHHHSHSQECPVCKALIQQEKLIPLYGRGKTQTDPRTKSYPGMEIPRRPAGQRPQTAPPPRQNPNQFSNFGFGFMGGFVPMATARFGNFTLGTAFGGIFPSLFNIQFHGFPDANGYGTNSGFPFGFNAYNGGFGHASTQASPEQQQQQQHADSMLKNMFLMIGIFVLLFVLWW* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00148 231 Pfam Zinc finger, C3HC4 type (RING finger) 30 71 - -
Pte10g00148 231 MobiDBLite consensus disorder prediction 1 22 - -
Pte10g00148 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 17 226 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pte10g00148 231 ProSiteProfiles Zinc finger RING-type profile. 31 72 IPR001841 -
Pte10g00148 231 SMART ring_2 31 71 IPR001841 -
Pte10g00148 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 88 IPR013083 -
Pte10g00148 231 SUPERFAMILY RING/U-box 27 84 - -
Pte10g00148 231 MobiDBLite consensus disorder prediction 86 121 - -
Pte10g00148 231 CDD RING-HC_AtRMA-like 29 73 - -
Pte10g00148 231 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00148 Pte-Chr10 1416784 1418428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00148 21 230 C3H Transcription Factor Family AT2G23780 59.722 7.83e-86 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00148 K10666 - mnt:21392517 346.665