Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00143 ATGACAACACCAGTTAATCATCAAGTCGAAGATCAGATGTTCATGTCTCAGCTGTATGCCGGAGCATACGCTCAAATGGTGCCCCAACAAGCTGAGTCAAAGCCAAAACGACGGCGTAAGAAGAACAAAGGAGGAGAAAATGGCAGCGAGGGTTTTAAAAAAAGAAAGCTCAGTGCAGAGCAAGTTATGCTTCTTGAGATGAACTTTGGAAACGAACATAAATTGGAGTCTGAAAGAAAGGACCGGTTGGCTTCTGAGTTAGGTCTCGACCCTCGTCAAGTTGCCGTTTGGTTTCAAAACCGAAGGGCTCGCTGGAAGAACAAAAAGTTAGAGGAAGAGTACTCCAATCTGAACAAACTCCACGAAACTGCTGTTCTTGACAAATGCCGCCTTGAATCTGAGGTGTTAAAGCTTAAGGAGCAACTGTGCGAAGCAGAGAAGGAGATTCAACTGTTGTCTGAAAAGCTTGATGGGGTGTCAAGTAACAGTCCAAGTAATTCATCGATCTCTGTGGAGACCGTTGATCCACCATTTCTAGGAGATTTTGTAGTTGAAGGATATGATGACGATGTCTTCTTCATGCCAGAGACTAATTACATGAATGGCATGGAGTGGTTTAGTCTATATATGTAG 633 0.436 MTTPVNHQVEDQMFMSQLYAGAYAQMVPQQAESKPKRRRKKNKGGENGSEGFKKRKLSAEQVMLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLNKLHETAVLDKCRLESEVLKLKEQLCEAEKEIQLLSEKLDGVSSNSPSNSSISVETVDPPFLGDFVVEGYDDDVFFMPETNYMNGMEWFSLYM* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00143 210 ProSitePatterns 'Homeobox' domain signature. 83 106 IPR017970 GO:0000981|GO:0006355
Pte10g00143 210 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 29 168 IPR045224 GO:0003700
Pte10g00143 210 MobiDBLite consensus disorder prediction 27 53 - -
Pte10g00143 210 Coils Coil 100 127 - -
Pte10g00143 210 Gene3D - 44 116 - -
Pte10g00143 210 PRINTS Lambda-repressor HTH signature 79 88 IPR000047 GO:0003677
Pte10g00143 210 PRINTS Lambda-repressor HTH signature 88 104 IPR000047 GO:0003677
Pte10g00143 210 SUPERFAMILY Homeodomain-like 51 116 IPR009057 -
Pte10g00143 210 CDD homeodomain 53 109 IPR001356 GO:0003677
Pte10g00143 210 FunFam homeobox-leucine zipper protein ATHB-40 47 116 - -
Pte10g00143 210 ProSiteProfiles 'Homeobox' domain profile. 48 108 IPR001356 GO:0003677
Pte10g00143 210 SMART HOX_1 51 112 IPR001356 GO:0003677
Pte10g00143 210 Pfam Homeodomain 54 107 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00143 Pte-Chr10 1355817 1357740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00143 5 211 Homeobox Transcription Factor Family AT4G36740 59.174 2.59e-77 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pte10g00143 Homeodomain 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00143 K09338 - qsa:O6P43_024730 281.567