Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00136 ATGCCTGTTGATTTAGATATCTCCACTACAGCGTCAGGTGAAGCTAGTGTGTCTTCCTCTGGCAATCAGGCGGACCCTCATAATACTAAGTCCACGACCAAGAGGAAGAGAAACCAACCCGGAATGCCTGATCCTGATGCAGAGGTGATTGCTCTGTCACCGAAGGCCCTATTGGCGACAAACCGATTCGTTTGCGAAATTTGCAACAAAGGGTTTCAGAGGGATCAAAATCTTCAGCTGCATCGTCGAGGTCACAATCTTCCCTGGAAATTGAGGCAGAGATCAGGCAAGGAAGTGAAGAAAAGGGTGTATGTGTGTCCTGAGCCAACTTGTGTTCATCATGACCCGTCTAGAGCTCTTGGTGATCTTACTGGAATAAAGAAACATTTTTGTCGAAAACATGGTGAGAAGAAGTGGAAATGCGACAAGTGTTCCAAGAAATATGCTGTTCAGTCAGATTGGAAAGCTCATTCTAAGGTTTGTGGAACCAGGGAGTACAAGTGCGATTGTGGAACTCTGTTTTCAAGGAGGGATAGCTTTGTCACCCACAGGGCGTTTTGCGATGCTTTGGCTGAGGAAAGTGCGAAGACCGGTTCTCAGACTCCTAGACCTACTCAAACCCCGGCAATTGTGCACCATAATCCGGAGTCCAGTCCGAAAGCTGTAAACGGCGATCCTACGCCTCAAGCGACGCCACCTCCACTTCCTCCAGCGCCGCCCCCAGCTACTCCTCAGTCGACTACGGTCGTGCCTCGTATTTTAATGGCGCAAAGTACGGAGTTGCAAGAGAATCACCCACGGAATTTAGAAGCAGCACAGGCCAAGACTGCTGTAAATGGTAGCTGCAGCACTGTAAATGGTAGCTGCAGCAGTAGTAATAGCTCAGGCAGCACAGGTGGTGCCAGAAGTAGTGTATTTGCTAGCTTGTTTGCTTCGTCCACTGCATCTGGAAATTTGCAACCTTCTCAAAATCCTAGTTTCACTGATTTAATCCGGGTCATGGCACGGCCTGACTGCCCACAAACAGACCTGATAGGATCTTCACCTTCCGAACCTGTTTCCCTCTGCCTCTCTACCAACTACGGGTCATCTATTTTTGCCACAGGAGGGCAAGAGCGGAGGCAGTATGCCCCGCCACCACAACCTGCCATGTCTGCCACTGCATTGCTTCAGAAGGCTGCTCAAATGGGTGCAGCAGCTTCAAGTGCTTCTCTACTACGTGGTTTGGGCATAGTGTCGTCCTCATCATCATCCGAACTGCCAGACAATTTCCAATGGAGTCAACAACTAGTAGAAACAGACAGGAGTTCGGCTCCTTCGGGGCTTGGTCTTGGGCTGACACGCGATAGTAGTTCTGGATTGAAGGAATTAATGATGGGAACTCCTGTATTTGGACCAAAGCAAACCACTTTGGATTTTCTTGGACTGGGGATGGCTGCTGGTGGCACCCCTAGCGGTGGGCTATCTGCACTTATTACATCAATCGGTGGTGGCCTTGATGTTACGACAGCAGCATCTTTTGGTGATGAAGAATTCTCTAGCAAAGATATTGGAAGGAGTTCGTGA 1566 0.4923 MPVDLDISTTASGEASVSSSGNQADPHNTKSTTKRKRNQPGMPDPDAEVIALSPKALLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSGKEVKKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKVCGTREYKCDCGTLFSRRDSFVTHRAFCDALAEESAKTGSQTPRPTQTPAIVHHNPESSPKAVNGDPTPQATPPPLPPAPPPATPQSTTVVPRILMAQSTELQENHPRNLEAAQAKTAVNGSCSTVNGSCSSSNSSGSTGGARSSVFASLFASSTASGNLQPSQNPSFTDLIRVMARPDCPQTDLIGSSPSEPVSLCLSTNYGSSIFATGGQERRQYAPPPQPAMSATALLQKAAQMGAAASSASLLRGLGIVSSSSSSELPDNFQWSQQLVETDRSSAPSGLGLGLTRDSSSGLKELMMGTPVFGPKQTTLDFLGLGMAAGGTPSGGLSALITSIGGGLDVTTAASFGDEEFSSKDIGRSS* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00136 521 SMART c2h2final6 104 134 IPR013087 -
Pte10g00136 521 SMART c2h2final6 63 85 IPR013087 -
Pte10g00136 521 SMART c2h2final6 139 159 IPR013087 -
Pte10g00136 521 MobiDBLite consensus disorder prediction 1 47 - -
Pte10g00136 521 MobiDBLite consensus disorder prediction 194 213 - -
Pte10g00136 521 MobiDBLite consensus disorder prediction 9 28 - -
Pte10g00136 521 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Pte10g00136 521 FunFam protein indeterminate-domain 5, chloroplastic-like 117 196 - -
Pte10g00136 521 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
Pte10g00136 521 Gene3D Classic Zinc Finger 117 197 - -
Pte10g00136 521 MobiDBLite consensus disorder prediction 193 247 - -
Pte10g00136 521 FunFam protein indeterminate-domain 12-like 42 110 - -
Pte10g00136 521 MobiDBLite consensus disorder prediction 226 246 - -
Pte10g00136 521 SUPERFAMILY beta-beta-alpha zinc fingers 62 159 IPR036236 -
Pte10g00136 521 Gene3D Classic Zinc Finger 63 105 - -
Pte10g00136 521 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 483 IPR031140 -
Pte10g00136 521 MobiDBLite consensus disorder prediction 283 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00136 Pte-Chr10 1304070 1307524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00136 1 522 IDZ Gene Family AT5G66730 59.041 4.00e-176 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte10g00136 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00136 K25869 - tcc:18610967 681.019