Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00107 ATGTCATCGTCAAATTCGCCGTGCGCAGCTTGCAAATTTTTGAGACGGAAGTGCACACAAGAATGCGTGTTCGCACCTTATTTCCCGCCGGACAATCCGCAAAGGTTTGCGAATGTACACAAGGTATTCGGAGCGAGCAACGTCACGAAGCTTCTCAACGAGTTAAGTGCTGCTCAGCGTGATGATGCTGTAAAATCATTGGCTTATGAAGCCGAGGCTCGTCTTAGAGATCCCGTGTACGGTTGTGTGGGTCTCATCTCAATACTTCAGCACAAGCTTAAACAGATGCAAAGTGAGCTGGATAATGCAAAGAAGGAGCTTGCAACGTATATCGGTCCCCAGGCCATGTTACCCATTTTGCAGCCACCGGATACGATACCTCAACATCACATGGGTAATACGTCCATGTTTCCCTACAATAACATGGCGGGTCCGATGATGGGTTTACCCTCGAGGGCATCCCATGGAGGTCCTTTGGTAATCCGTGATGCTCAGCATAATCATCATCCGCCGCAGCATCATCAGCAGCAACAGATTTTTGATGCTCAGCAGATAGCTGTGGCTGTGGCCAGAGAACAGGAGATGTTAAGAAGTTACGAGCAGCAACAGCAGCAGCAACAACAAGAGCTTTTGAGGTTTAATGGTGGCTTTGATATGGGTTCGTCTTCTGGTGGTGAGTTCAACCATATGTCCAGTGCTGCTGGGGCAGGAGTTGCATTGGCTTTGGGAACGTTTGACAATGCTTATCATCAGCTTCAGCCACAACAAGCTGAGAATCATCATCCTCATCACCATCAACTTCACCCGCAGCTGCTGTTTTCACCACAGCAACCACAAGCGCAACAACCTCAGTCACAGCAAACCCAGCAACAGCAGCAGTCGGAAAGCGAGGATGGTCGGAGCGGTGGTCTAGCTTGA 918 0.4946 MSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFANVHKVFGASNVTKLLNELSAAQRDDAVKSLAYEAEARLRDPVYGCVGLISILQHKLKQMQSELDNAKKELATYIGPQAMLPILQPPDTIPQHHMGNTSMFPYNNMAGPMMGLPSRASHGGPLVIRDAQHNHHPPQHHQQQQIFDAQQIAVAVAREQEMLRSYEQQQQQQQQELLRFNGGFDMGSSSGGEFNHMSSAAGAGVALALGTFDNAYHQLQPQQAENHHPHHHQLHPQLLFSPQQPQAQQPQSQQTQQQQQSESEDGRSGGLA* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00107 305 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 279 - -
Pte10g00107 305 MobiDBLite consensus disorder prediction 255 305 - -
Pte10g00107 305 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Pte10g00107 305 Coils Coil 86 106 - -
Pte10g00107 305 MobiDBLite consensus disorder prediction 270 299 - -
Pte10g00107 305 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Pte10g00107 305 Coils Coil 189 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00107 Pte-Chr10 1015477 1016394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00107 1 250 AS2 family AT5G66870 55.235 4.06e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pte10g00107 LOB 3.4e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00107 - - qsa:O6P43_033796 329.717