Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00092 ATGGCCGACGCCGCTGTTTCCAAGTTCAAGAAGGTAATTTCTCTTCTCGGTCGAAACAGAACAGGCATGCTCGATTTAGAAGAGCACCTTGGGACCGGAAAATTGAGGTTGAAGAGAGTAGTAAGAGTTCCTGCCATAAGCATGAAGATGTCTGATGTACCACCAGACGAATATTCATGGAGAAAGTATGGTCAGAAACCAATTGAGGGTTCACCTCATACGAGGGGGTATTACAAGTGCAGCAGTAGAGACTTAGAGGTTGTCCAGCCAGGAAACATCAAGAGCGAGCTTTAG 294 0.4626 MADAAVSKFKKVISLLGRNRTGMLDLEEHLGTGKLRLKRVVRVPAISMKMSDVPPDEYSWRKYGQKPIEGSPHTRGYYKCSSRDLEVVQPGNIKSEL* 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00092 97 Pfam Plant zinc cluster domain 34 52 IPR018872 -
Pte10g00092 97 SUPERFAMILY WRKY DNA-binding domain 51 84 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pte10g00092 97 Gene3D WRKY domain 34 88 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pte10g00092 97 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 82 IPR044810 GO:0003700
Pte10g00092 97 ProSiteProfiles WRKY domain profile. 49 83 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pte10g00092 97 SMART WRKY_cls 54 91 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pte10g00092 97 Pfam WRKY DNA -binding domain 56 83 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00092 Pte-Chr10 861657 862690 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00092 34 82 WRKY Transcription Factor Family AT5G28650 79.592 1.05e-24 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pte10g00092 WRKY 4e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00092 - - egr:104418534 100.523