Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00086 ATGTATGACCCATTAAATAAGAAATTGACTATGGATGTTGCCAGAAAAGAAATGGATCGGATTAAGGGTCCGTGGAGCCCCGAAGAAGACGAAGCTCTTCGACAGCTTGTAGAAAAACACGGACCCAGAAACTGGTCTTTGATGAGTAAATCTATTCCGGGTAGATCCGGCAAGTCTTGCAGACTTCGATGGTGTAACCAGCTATCACCTCAAGTGGAGCATCGGGCTTTTACGCCTAAAGAGGATGAGACTATAATTAAGGCCCATGCTCGCTTCGGCAACAAATGGGCCACCATCGCAAGGCTTTTATCTGGTCGGACCGATAACGCCATTAAGAACCACTGGAACTCCACGTTAAAGCGTAAGTTCTCGTGTATGTTGATGGAAGAAGCTGGGAGTCCGGGTGGGTTTGATGGCGTTGAGAACCAGCAGCCATTGAAGAGATCAGTAAGTTCTGGTTCTGCTATGCCTTTGCCGACTGTCCCTTACATGAATACACCCACACCGAGTACGCCCTCTGGGTCTGATGTCAGCGATTCCAATGCATCTTCTTCCCACGTGTACCGACATGTAGCAGAAACCGGCAGGATTCTACCGCCGATCGAAAAAACGTCGTCTTCTGACGATCCTCCAACCTCATTGTCTCTTTCCTTGCCTGGGATTGGTTCCGTAGAATCGTCAGACCGGGGTAGTGAGCTAAGACAACTACCACCGCCCGCATCGCAAACTGTACAAACTACGGTGTCCTTTCTTCCTGCGATGGCCTCATCGCCTACTGCAGTTCCTTTACAGCAGCAGTTGCAGCAAGTACAGTTGGATCGTGATGAACGGAGAAGCATATGCAGATTGTCGCCTGCAGTGTGCGAGAACAAAAGCGGTTTGGTGCCTTTTGGTTTCAGCTCCGAGTTGATGGCCGTGATGCAAGAAATGATAAAGATGGAAGTGAGGAACTACATGGTTGGTTTGAAGCAAAATAGTAATGTCAATGGACATGGCACCGGCATGTGTATCCAGCAAGCAGTTGATGGCTTTAGGAATGTGTCGATGAATCAAATTGGGGTGAGCCGGATAGACAATTGA 1080 0.4852 MYDPLNKKLTMDVARKEMDRIKGPWSPEEDEALRQLVEKHGPRNWSLMSKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPKEDETIIKAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKFSCMLMEEAGSPGGFDGVENQQPLKRSVSSGSAMPLPTVPYMNTPTPSTPSGSDVSDSNASSSHVYRHVAETGRILPPIEKTSSSDDPPTSLSLSLPGIGSVESSDRGSELRQLPPPASQTVQTTVSFLPAMASSPTAVPLQQQLQQVQLDRDERRSICRLSPAVCENKSGLVPFGFSSELMAVMQEMIKMEVRNYMVGLKQNSNVNGHGTGMCIQQAVDGFRNVSMNQIGVSRIDN* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00086 359 PANTHER MYB PROTEIN-RELATED 22 200 - -
Pte10g00086 359 SUPERFAMILY Homeodomain-like 19 115 IPR009057 -
Pte10g00086 359 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Pte10g00086 359 SMART sant 73 121 IPR001005 -
Pte10g00086 359 SMART sant 21 70 IPR001005 -
Pte10g00086 359 Gene3D - 76 122 - -
Pte10g00086 359 CDD SANT 76 119 IPR001005 -
Pte10g00086 359 MobiDBLite consensus disorder prediction 205 244 - -
Pte10g00086 359 FunFam Transcription factor MYB44 76 122 - -
Pte10g00086 359 ProSiteProfiles Myb-like domain profile. 17 68 IPR001005 -
Pte10g00086 359 Pfam Myb-like DNA-binding domain 76 118 IPR001005 -
Pte10g00086 359 Pfam Myb-like DNA-binding domain 22 68 IPR001005 -
Pte10g00086 359 FunFam MYB transcription factor 22 73 - -
Pte10g00086 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 72 IPR017930 -
Pte10g00086 359 MobiDBLite consensus disorder prediction 135 244 - -
Pte10g00086 359 Gene3D - 21 73 - -
Pte10g00086 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 123 IPR017930 -
Pte10g00086 359 MobiDBLite consensus disorder prediction 144 188 - -
Pte10g00086 359 CDD SANT 24 66 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00086 Pte-Chr10 805488 807250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00086 15 358 MYB Transcription Factor Family AT4G37260 47.887 1.59e-94 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte10g00086 Myb_DNA-binding 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00086 K09422 - qsa:O6P43_024595 402.905