Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte10g00076 ATGCAAAAAATTAAGCATATGGGACATGAACAGACATCGTCAACAATAAAAGATGCTATAACAGATCAAAATGAGGGTAATAAGCCTAGTTCTAAGCTCCTGGAGAAAATTTCTGAAAACTTGGGGTTGGAAACAAACCTGGATATTTTAATCGAGGCAGTTGCACTTGAAAAACTGAAGGAGAATGCTGAACAAGCAGAAAAGTCTGCAGAAGCAGAGTACATGGATCAAATTATCACTCTTGTAACGTATATGCACGAATACCTTCTTGCAATCAAGCAGTCAGAGAGATGTAGCCCTGTTCCCATTCCTGCTGATTTTTGTTGTCCCCTGTCACTGGAGCTGATGATAGATCCTGTTATTGTGGCATCTGGGCAAACATATGAGCGTGTTTACATAAAAAACTGGATTGAACTTGGACTAACTGTATGCCCTAAGACCCGTCAAACTTTGTCTCACACGAATTTAATTCCTAATTATACTGTAAAGGCACTAATTGCTAATTGGTGCGAGTTAAACAATGTGAAGTTAGTTGAGCCAATGAAACCAGTGGGCTTAAGCCAAGCATCACGGAGTATTGGGCTCATGGATTCTGGAGCTACTAGAGAAGTTGTTTTTGCTTCATCCAGGATTAACCAGATGCTGGTCACTACTCACTCTTCTGTTGGTTCACCTGCTAAGAATTCAATATCTTCTGATGGAGCAGAATGGGAAGACACATCACCGTTGCATCCTCAATCAAGTTCTGATGGTTTCTTGCCTGCTGAAAATATAGAAGGTTTAGATATCGCAAGATTATCACTGACAGATTCTGATGACAGGCCTGCTAATGCTGAAGAAAGTGTCTTGGACATTGATACCCATCTTTCCTTGTTGCCATCTGGAAGGGAATCTTCAAATTCTACAGTGGATGAAAAGTCTCGACACCATATGAGAACTGCGTCAGAGTCCAGCACTCTAGTTAATGCAAACAGTTCTCAAGGACCACAATTAGATGCCAATGATACCTCACAATCACGTTCTAATCTGACTGGCTATAGCAGTGATGCTTCTGCTGAGGTAAGTACGGGATCAGATGCTACTGCTTCTACCTTGACTGCCCCATAG 1107 0.4146 MQKIKHMGHEQTSSTIKDAITDQNEGNKPSSKLLEKISENLGLETNLDILIEAVALEKLKENAEQAEKSAEAEYMDQIITLVTYMHEYLLAIKQSERCSPVPIPADFCCPLSLELMIDPVIVASGQTYERVYIKNWIELGLTVCPKTRQTLSHTNLIPNYTVKALIANWCELNNVKLVEPMKPVGLSQASRSIGLMDSGATREVVFASSRINQMLVTTHSSVGSPAKNSISSDGAEWEDTSPLHPQSSSDGFLPAENIEGLDIARLSLTDSDDRPANAEESVLDIDTHLSLLPSGRESSNSTVDEKSRHHMRTASESSTLVNANSSQGPQLDANDTSQSRSNLTGYSSDASAEVSTGSDATASTLTAP* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte10g00076 368 SMART Ubox_2 106 169 IPR003613 GO:0004842|GO:0016567
Pte10g00076 368 MobiDBLite consensus disorder prediction 221 254 - -
Pte10g00076 368 ProSiteProfiles U-box domain profile. 102 176 IPR003613 GO:0004842|GO:0016567
Pte10g00076 368 FunFam RING-type E3 ubiquitin transferase 102 177 - -
Pte10g00076 368 PANTHER U BOX DOMAIN-CONTAINING 18 278 - -
Pte10g00076 368 SUPERFAMILY RING/U-box 90 179 - -
Pte10g00076 368 Coils Coil 53 76 - -
Pte10g00076 368 CDD RING-Ubox_PUB 104 156 IPR045210 -
Pte10g00076 368 MobiDBLite consensus disorder prediction 314 368 - -
Pte10g00076 368 Pfam U-box domain 103 173 IPR003613 GO:0004842|GO:0016567
Pte10g00076 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 177 IPR013083 -
Pte10g00076 368 MobiDBLite consensus disorder prediction 271 368 - -
Pte10g00076 368 MobiDBLite consensus disorder prediction 13 30 - -
Pte10g00076 368 MobiDBLite consensus disorder prediction 221 253 - -
Pte10g00076 368 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte10g00076 Pte-Chr10 742100 743206 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte10g00076 63 357 U-box Gene Family AT2G23140 45.973 1.86e-70 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte10g00076 - - qsa:O6P43_024581 415.231